miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22367 3' -58.9 NC_005045.1 + 34452 1.06 0.000408
Target:  5'- gCCUGACCAGCGCCACCAUGCUGGGAUu -3'
miRNA:   3'- -GGACUGGUCGCGGUGGUACGACCCUA- -5'
22367 3' -58.9 NC_005045.1 + 25068 0.7 0.223087
Target:  5'- gCCUgGACCGGCGCCACUuggGcggugaucagggucuUGCUcGGGAg -3'
miRNA:   3'- -GGA-CUGGUCGCGGUGG---U---------------ACGA-CCCUa -5'
22367 3' -58.9 NC_005045.1 + 29362 0.7 0.232709
Target:  5'- gCUGcGCCAGCGCCugUAgggcaucGUUGGGGUu -3'
miRNA:   3'- gGAC-UGGUCGCGGugGUa------CGACCCUA- -5'
22367 3' -58.9 NC_005045.1 + 30533 0.69 0.251691
Target:  5'- gCUGGCCAGCGaCCGCaagCAUGC-GGGu- -3'
miRNA:   3'- gGACUGGUCGC-GGUG---GUACGaCCCua -5'
22367 3' -58.9 NC_005045.1 + 38723 0.68 0.293456
Target:  5'- gCUGugCAGCGaCCAUCGccuUGUUGGGc- -3'
miRNA:   3'- gGACugGUCGC-GGUGGU---ACGACCCua -5'
22367 3' -58.9 NC_005045.1 + 39570 0.68 0.316289
Target:  5'- aCCUG-CCGGCGCUgaugGCUGgagGCUGGGc- -3'
miRNA:   3'- -GGACuGGUCGCGG----UGGUa--CGACCCua -5'
22367 3' -58.9 NC_005045.1 + 11251 0.67 0.374662
Target:  5'- gCCUGGCgCAGCauGCCAuCCAguacccgGCgGGGAa -3'
miRNA:   3'- -GGACUG-GUCG--CGGU-GGUa------CGaCCCUa -5'
22367 3' -58.9 NC_005045.1 + 3167 0.66 0.401817
Target:  5'- -aUGACCAGUaccgcaucgGCCACCGcgugggGCUGGuGAa -3'
miRNA:   3'- ggACUGGUCG---------CGGUGGUa-----CGACC-CUa -5'
22367 3' -58.9 NC_005045.1 + 31152 0.66 0.401817
Target:  5'- aCCUGGgCAGUGgCA--AUGCUGGGGc -3'
miRNA:   3'- -GGACUgGUCGCgGUggUACGACCCUa -5'
22367 3' -58.9 NC_005045.1 + 29884 0.66 0.429226
Target:  5'- gCCUGAgcaucgcuCCAGCgGCCcuccucgACCAUGCcacGGGAg -3'
miRNA:   3'- -GGACU--------GGUCG-CGG-------UGGUACGa--CCCUa -5'
22367 3' -58.9 NC_005045.1 + 4571 0.66 0.43019
Target:  5'- --gGACCAuGCGCCACCcgucguUGCgcagcacggUGGGAc -3'
miRNA:   3'- ggaCUGGU-CGCGGUGGu-----ACG---------ACCCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.