Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22367 | 3' | -58.9 | NC_005045.1 | + | 3167 | 0.66 | 0.401817 |
Target: 5'- -aUGACCAGUaccgcaucgGCCACCGcgugggGCUGGuGAa -3' miRNA: 3'- ggACUGGUCG---------CGGUGGUa-----CGACC-CUa -5' |
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22367 | 3' | -58.9 | NC_005045.1 | + | 4571 | 0.66 | 0.43019 |
Target: 5'- --gGACCAuGCGCCACCcgucguUGCgcagcacggUGGGAc -3' miRNA: 3'- ggaCUGGU-CGCGGUGGu-----ACG---------ACCCUa -5' |
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22367 | 3' | -58.9 | NC_005045.1 | + | 11251 | 0.67 | 0.374662 |
Target: 5'- gCCUGGCgCAGCauGCCAuCCAguacccgGCgGGGAa -3' miRNA: 3'- -GGACUG-GUCG--CGGU-GGUa------CGaCCCUa -5' |
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22367 | 3' | -58.9 | NC_005045.1 | + | 25068 | 0.7 | 0.223087 |
Target: 5'- gCCUgGACCGGCGCCACUuggGcggugaucagggucuUGCUcGGGAg -3' miRNA: 3'- -GGA-CUGGUCGCGGUGG---U---------------ACGA-CCCUa -5' |
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22367 | 3' | -58.9 | NC_005045.1 | + | 29362 | 0.7 | 0.232709 |
Target: 5'- gCUGcGCCAGCGCCugUAgggcaucGUUGGGGUu -3' miRNA: 3'- gGAC-UGGUCGCGGugGUa------CGACCCUA- -5' |
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22367 | 3' | -58.9 | NC_005045.1 | + | 29884 | 0.66 | 0.429226 |
Target: 5'- gCCUGAgcaucgcuCCAGCgGCCcuccucgACCAUGCcacGGGAg -3' miRNA: 3'- -GGACU--------GGUCG-CGG-------UGGUACGa--CCCUa -5' |
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22367 | 3' | -58.9 | NC_005045.1 | + | 30533 | 0.69 | 0.251691 |
Target: 5'- gCUGGCCAGCGaCCGCaagCAUGC-GGGu- -3' miRNA: 3'- gGACUGGUCGC-GGUG---GUACGaCCCua -5' |
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22367 | 3' | -58.9 | NC_005045.1 | + | 31152 | 0.66 | 0.401817 |
Target: 5'- aCCUGGgCAGUGgCA--AUGCUGGGGc -3' miRNA: 3'- -GGACUgGUCGCgGUggUACGACCCUa -5' |
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22367 | 3' | -58.9 | NC_005045.1 | + | 34452 | 1.06 | 0.000408 |
Target: 5'- gCCUGACCAGCGCCACCAUGCUGGGAUu -3' miRNA: 3'- -GGACUGGUCGCGGUGGUACGACCCUA- -5' |
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22367 | 3' | -58.9 | NC_005045.1 | + | 38723 | 0.68 | 0.293456 |
Target: 5'- gCUGugCAGCGaCCAUCGccuUGUUGGGc- -3' miRNA: 3'- gGACugGUCGC-GGUGGU---ACGACCCua -5' |
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22367 | 3' | -58.9 | NC_005045.1 | + | 39570 | 0.68 | 0.316289 |
Target: 5'- aCCUG-CCGGCGCUgaugGCUGgagGCUGGGc- -3' miRNA: 3'- -GGACuGGUCGCGG----UGGUa--CGACCCua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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