Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22367 | 5' | -54.2 | NC_005045.1 | + | 32157 | 0.66 | 0.65054 |
Target: 5'- -aGUCGGgUauguUGCUGGGCUGgauGCCGCa- -3' miRNA: 3'- caUAGUCgA----ACGACUCGAC---CGGUGcu -5' |
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22367 | 5' | -54.2 | NC_005045.1 | + | 28531 | 0.66 | 0.615999 |
Target: 5'- ---aCGGCUUGCUugcgGuAGCUagcGGCCAUGAc -3' miRNA: 3'- cauaGUCGAACGA----C-UCGA---CCGGUGCU- -5' |
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22367 | 5' | -54.2 | NC_005045.1 | + | 5821 | 0.67 | 0.604502 |
Target: 5'- -cGUCGGCcugGCacaAGCUGGCCGCu- -3' miRNA: 3'- caUAGUCGaa-CGac-UCGACCGGUGcu -5' |
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22367 | 5' | -54.2 | NC_005045.1 | + | 17138 | 0.67 | 0.59303 |
Target: 5'- ---cCAGCUUGC--GGCUGGUgaaCGCGAa -3' miRNA: 3'- cauaGUCGAACGacUCGACCG---GUGCU- -5' |
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22367 | 5' | -54.2 | NC_005045.1 | + | 8459 | 0.67 | 0.570206 |
Target: 5'- cGUAUgAGCUgcgccgGCUGAGCgacgaGGCCcuGCGc -3' miRNA: 3'- -CAUAgUCGAa-----CGACUCGa----CCGG--UGCu -5' |
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22367 | 5' | -54.2 | NC_005045.1 | + | 8437 | 0.68 | 0.536405 |
Target: 5'- ---cCAGUUcGUUGAGCUGGgaCACGAc -3' miRNA: 3'- cauaGUCGAaCGACUCGACCg-GUGCU- -5' |
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22367 | 5' | -54.2 | NC_005045.1 | + | 6086 | 0.68 | 0.51426 |
Target: 5'- --cUCAGCgauUGCUGAcGgUGGCCcCGAc -3' miRNA: 3'- cauAGUCGa--ACGACU-CgACCGGuGCU- -5' |
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22367 | 5' | -54.2 | NC_005045.1 | + | 6189 | 0.69 | 0.492498 |
Target: 5'- -gGUCAGCUUGCugaUGAGCcgacagacGGCCuCGGu -3' miRNA: 3'- caUAGUCGAACG---ACUCGa-------CCGGuGCU- -5' |
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22367 | 5' | -54.2 | NC_005045.1 | + | 41984 | 0.69 | 0.49142 |
Target: 5'- gGUGUguGUggGCUGGGUUGGCUgguguggGCGGg -3' miRNA: 3'- -CAUAguCGaaCGACUCGACCGG-------UGCU- -5' |
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22367 | 5' | -54.2 | NC_005045.1 | + | 33653 | 0.72 | 0.312126 |
Target: 5'- ---cCuGCUcGUUGAGCUGGUCGCGGa -3' miRNA: 3'- cauaGuCGAaCGACUCGACCGGUGCU- -5' |
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22367 | 5' | -54.2 | NC_005045.1 | + | 41841 | 0.74 | 0.239343 |
Target: 5'- ----aAGCUgcggGCUGAGCUGGUCGCa- -3' miRNA: 3'- cauagUCGAa---CGACUCGACCGGUGcu -5' |
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22367 | 5' | -54.2 | NC_005045.1 | + | 25952 | 0.79 | 0.114154 |
Target: 5'- -gAUCuGCUcGCUGAGCUGGCC-CGGc -3' miRNA: 3'- caUAGuCGAaCGACUCGACCGGuGCU- -5' |
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22367 | 5' | -54.2 | NC_005045.1 | + | 34488 | 1.09 | 0.00076 |
Target: 5'- uGUAUCAGCUUGCUGAGCUGGCCACGAu -3' miRNA: 3'- -CAUAGUCGAACGACUCGACCGGUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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