miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22367 5' -54.2 NC_005045.1 + 32157 0.66 0.65054
Target:  5'- -aGUCGGgUauguUGCUGGGCUGgauGCCGCa- -3'
miRNA:   3'- caUAGUCgA----ACGACUCGAC---CGGUGcu -5'
22367 5' -54.2 NC_005045.1 + 28531 0.66 0.615999
Target:  5'- ---aCGGCUUGCUugcgGuAGCUagcGGCCAUGAc -3'
miRNA:   3'- cauaGUCGAACGA----C-UCGA---CCGGUGCU- -5'
22367 5' -54.2 NC_005045.1 + 5821 0.67 0.604502
Target:  5'- -cGUCGGCcugGCacaAGCUGGCCGCu- -3'
miRNA:   3'- caUAGUCGaa-CGac-UCGACCGGUGcu -5'
22367 5' -54.2 NC_005045.1 + 17138 0.67 0.59303
Target:  5'- ---cCAGCUUGC--GGCUGGUgaaCGCGAa -3'
miRNA:   3'- cauaGUCGAACGacUCGACCG---GUGCU- -5'
22367 5' -54.2 NC_005045.1 + 8459 0.67 0.570206
Target:  5'- cGUAUgAGCUgcgccgGCUGAGCgacgaGGCCcuGCGc -3'
miRNA:   3'- -CAUAgUCGAa-----CGACUCGa----CCGG--UGCu -5'
22367 5' -54.2 NC_005045.1 + 8437 0.68 0.536405
Target:  5'- ---cCAGUUcGUUGAGCUGGgaCACGAc -3'
miRNA:   3'- cauaGUCGAaCGACUCGACCg-GUGCU- -5'
22367 5' -54.2 NC_005045.1 + 6086 0.68 0.51426
Target:  5'- --cUCAGCgauUGCUGAcGgUGGCCcCGAc -3'
miRNA:   3'- cauAGUCGa--ACGACU-CgACCGGuGCU- -5'
22367 5' -54.2 NC_005045.1 + 6189 0.69 0.492498
Target:  5'- -gGUCAGCUUGCugaUGAGCcgacagacGGCCuCGGu -3'
miRNA:   3'- caUAGUCGAACG---ACUCGa-------CCGGuGCU- -5'
22367 5' -54.2 NC_005045.1 + 41984 0.69 0.49142
Target:  5'- gGUGUguGUggGCUGGGUUGGCUgguguggGCGGg -3'
miRNA:   3'- -CAUAguCGaaCGACUCGACCGG-------UGCU- -5'
22367 5' -54.2 NC_005045.1 + 33653 0.72 0.312126
Target:  5'- ---cCuGCUcGUUGAGCUGGUCGCGGa -3'
miRNA:   3'- cauaGuCGAaCGACUCGACCGGUGCU- -5'
22367 5' -54.2 NC_005045.1 + 41841 0.74 0.239343
Target:  5'- ----aAGCUgcggGCUGAGCUGGUCGCa- -3'
miRNA:   3'- cauagUCGAa---CGACUCGACCGGUGcu -5'
22367 5' -54.2 NC_005045.1 + 25952 0.79 0.114154
Target:  5'- -gAUCuGCUcGCUGAGCUGGCC-CGGc -3'
miRNA:   3'- caUAGuCGAaCGACUCGACCGGuGCU- -5'
22367 5' -54.2 NC_005045.1 + 34488 1.09 0.00076
Target:  5'- uGUAUCAGCUUGCUGAGCUGGCCACGAu -3'
miRNA:   3'- -CAUAGUCGAACGACUCGACCGGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.