Results 1 - 11 of 11 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22368 | 3' | -55.1 | NC_005045.1 | + | 18254 | 0.66 | 0.6618 |
Target: 5'- gCCCaGGACCUCGCaGucAUGGcGcUGCGGGc -3' miRNA: 3'- -GGG-CCUGGAGCGaC--UACU-CuACGUCU- -5' |
|||||||
22368 | 3' | -55.1 | NC_005045.1 | + | 35813 | 0.66 | 0.6618 |
Target: 5'- uCCgGGACCugggcaggcgugUCGCgGA--AGAUGCGGAc -3' miRNA: 3'- -GGgCCUGG------------AGCGaCUacUCUACGUCU- -5' |
|||||||
22368 | 3' | -55.1 | NC_005045.1 | + | 23470 | 0.66 | 0.650643 |
Target: 5'- aCCgGGGCCg-GCUGAgcGGGugcuUGCGGAa -3' miRNA: 3'- -GGgCCUGGagCGACUa-CUCu---ACGUCU- -5' |
|||||||
22368 | 3' | -55.1 | NC_005045.1 | + | 34203 | 0.67 | 0.58369 |
Target: 5'- aCCgGGACCUCgaccgGCUGAUGgAGAacuacgccgGCAGu -3' miRNA: 3'- -GGgCCUGGAG-----CGACUAC-UCUa--------CGUCu -5' |
|||||||
22368 | 3' | -55.1 | NC_005045.1 | + | 14257 | 0.68 | 0.558312 |
Target: 5'- cCCUGGAauuCCUUggcguggucacccaGCUcGAUGuAGAUGCAGAa -3' miRNA: 3'- -GGGCCU---GGAG--------------CGA-CUAC-UCUACGUCU- -5' |
|||||||
22368 | 3' | -55.1 | NC_005045.1 | + | 25494 | 0.68 | 0.528937 |
Target: 5'- cCCCGGACCUCcagUGGgacggccugGGGGUGCgAGAu -3' miRNA: 3'- -GGGCCUGGAGcg-ACUa--------CUCUACG-UCU- -5' |
|||||||
22368 | 3' | -55.1 | NC_005045.1 | + | 6192 | 0.68 | 0.518199 |
Target: 5'- gCCGGucAgCUUGCUGAUGAGccGaCAGAc -3' miRNA: 3'- gGGCC--UgGAGCGACUACUCuaC-GUCU- -5' |
|||||||
22368 | 3' | -55.1 | NC_005045.1 | + | 33937 | 0.69 | 0.455824 |
Target: 5'- gCCaCGGaacacuGCCUCGCUGAUGGcucgGCGGGc -3' miRNA: 3'- -GG-GCC------UGGAGCGACUACUcua-CGUCU- -5' |
|||||||
22368 | 3' | -55.1 | NC_005045.1 | + | 7311 | 0.7 | 0.426185 |
Target: 5'- cCUCGGGCCUCGaacaUGuccugGAGGUGcCAGGu -3' miRNA: 3'- -GGGCCUGGAGCg---ACua---CUCUAC-GUCU- -5' |
|||||||
22368 | 3' | -55.1 | NC_005045.1 | + | 8626 | 0.73 | 0.267839 |
Target: 5'- gCCgGGGCCUCgguGCUGGUGGcagcgccuccuGAUGCGGGc -3' miRNA: 3'- -GGgCCUGGAG---CGACUACU-----------CUACGUCU- -5' |
|||||||
22368 | 3' | -55.1 | NC_005045.1 | + | 34599 | 1.11 | 0.000577 |
Target: 5'- aCCCGGACCUCGCUGAUGAGAUGCAGAc -3' miRNA: 3'- -GGGCCUGGAGCGACUACUCUACGUCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home