miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22368 3' -55.1 NC_005045.1 + 35813 0.66 0.6618
Target:  5'- uCCgGGACCugggcaggcgugUCGCgGA--AGAUGCGGAc -3'
miRNA:   3'- -GGgCCUGG------------AGCGaCUacUCUACGUCU- -5'
22368 3' -55.1 NC_005045.1 + 18254 0.66 0.6618
Target:  5'- gCCCaGGACCUCGCaGucAUGGcGcUGCGGGc -3'
miRNA:   3'- -GGG-CCUGGAGCGaC--UACU-CuACGUCU- -5'
22368 3' -55.1 NC_005045.1 + 23470 0.66 0.650643
Target:  5'- aCCgGGGCCg-GCUGAgcGGGugcuUGCGGAa -3'
miRNA:   3'- -GGgCCUGGagCGACUa-CUCu---ACGUCU- -5'
22368 3' -55.1 NC_005045.1 + 34203 0.67 0.58369
Target:  5'- aCCgGGACCUCgaccgGCUGAUGgAGAacuacgccgGCAGu -3'
miRNA:   3'- -GGgCCUGGAG-----CGACUAC-UCUa--------CGUCu -5'
22368 3' -55.1 NC_005045.1 + 14257 0.68 0.558312
Target:  5'- cCCUGGAauuCCUUggcguggucacccaGCUcGAUGuAGAUGCAGAa -3'
miRNA:   3'- -GGGCCU---GGAG--------------CGA-CUAC-UCUACGUCU- -5'
22368 3' -55.1 NC_005045.1 + 25494 0.68 0.528937
Target:  5'- cCCCGGACCUCcagUGGgacggccugGGGGUGCgAGAu -3'
miRNA:   3'- -GGGCCUGGAGcg-ACUa--------CUCUACG-UCU- -5'
22368 3' -55.1 NC_005045.1 + 6192 0.68 0.518199
Target:  5'- gCCGGucAgCUUGCUGAUGAGccGaCAGAc -3'
miRNA:   3'- gGGCC--UgGAGCGACUACUCuaC-GUCU- -5'
22368 3' -55.1 NC_005045.1 + 33937 0.69 0.455824
Target:  5'- gCCaCGGaacacuGCCUCGCUGAUGGcucgGCGGGc -3'
miRNA:   3'- -GG-GCC------UGGAGCGACUACUcua-CGUCU- -5'
22368 3' -55.1 NC_005045.1 + 7311 0.7 0.426185
Target:  5'- cCUCGGGCCUCGaacaUGuccugGAGGUGcCAGGu -3'
miRNA:   3'- -GGGCCUGGAGCg---ACua---CUCUAC-GUCU- -5'
22368 3' -55.1 NC_005045.1 + 8626 0.73 0.267839
Target:  5'- gCCgGGGCCUCgguGCUGGUGGcagcgccuccuGAUGCGGGc -3'
miRNA:   3'- -GGgCCUGGAG---CGACUACU-----------CUACGUCU- -5'
22368 3' -55.1 NC_005045.1 + 34599 1.11 0.000577
Target:  5'- aCCCGGACCUCGCUGAUGAGAUGCAGAc -3'
miRNA:   3'- -GGGCCUGGAGCGACUACUCUACGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.