Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22368 | 5' | -52.3 | NC_005045.1 | + | 3928 | 0.69 | 0.642005 |
Target: 5'- gGGCCUGAaguuGCCa-GCaCAAUGACGccUUCGa -3' miRNA: 3'- -CCGGACU----UGGagCG-GUUGCUGU--AAGC- -5' |
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22368 | 5' | -52.3 | NC_005045.1 | + | 4048 | 0.68 | 0.709553 |
Target: 5'- cGGCCUGuacugcuGCCUCGgCCuGCuGGCAggCGc -3' miRNA: 3'- -CCGGACu------UGGAGC-GGuUG-CUGUaaGC- -5' |
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22368 | 5' | -52.3 | NC_005045.1 | + | 5073 | 0.69 | 0.664683 |
Target: 5'- aGCCUGGGCU--GCCGACGACuggaCGg -3' miRNA: 3'- cCGGACUUGGagCGGUUGCUGuaa-GC- -5' |
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22368 | 5' | -52.3 | NC_005045.1 | + | 6252 | 0.66 | 0.794599 |
Target: 5'- aGCC---ACCaUCGCCGGCGGCG-UCGu -3' miRNA: 3'- cCGGacuUGG-AGCGGUUGCUGUaAGC- -5' |
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22368 | 5' | -52.3 | NC_005045.1 | + | 10510 | 0.66 | 0.833187 |
Target: 5'- cGGCUaccACCgCGCCAugGGC-UUCGa -3' miRNA: 3'- -CCGGacuUGGaGCGGUugCUGuAAGC- -5' |
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22368 | 5' | -52.3 | NC_005045.1 | + | 13578 | 0.73 | 0.405926 |
Target: 5'- cGCCUGGGCUacgacaUCGCCGACGuucCGUUCc -3' miRNA: 3'- cCGGACUUGG------AGCGGUUGCu--GUAAGc -5' |
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22368 | 5' | -52.3 | NC_005045.1 | + | 14244 | 0.71 | 0.518761 |
Target: 5'- cGCCUGGGCUUCGCacuguggGGCGACGUg-- -3' miRNA: 3'- cCGGACUUGGAGCGg------UUGCUGUAagc -5' |
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22368 | 5' | -52.3 | NC_005045.1 | + | 15017 | 0.66 | 0.794599 |
Target: 5'- gGGCCUcGGcaguaccuaccACCggGgCGGCGACAUUCGc -3' miRNA: 3'- -CCGGA-CU-----------UGGagCgGUUGCUGUAAGC- -5' |
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22368 | 5' | -52.3 | NC_005045.1 | + | 20137 | 0.68 | 0.720599 |
Target: 5'- aGGCCaaggacgaguUGGACCccaugcgcaaCGCCAACGGCAU-CGc -3' miRNA: 3'- -CCGG----------ACUUGGa---------GCGGUUGCUGUAaGC- -5' |
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22368 | 5' | -52.3 | NC_005045.1 | + | 21602 | 0.66 | 0.8143 |
Target: 5'- cGCCUGuGCC-CGCCugauucCGGCGUcgUCGa -3' miRNA: 3'- cCGGACuUGGaGCGGuu----GCUGUA--AGC- -5' |
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22368 | 5' | -52.3 | NC_005045.1 | + | 22322 | 0.66 | 0.823851 |
Target: 5'- uGCCgaccugGAACCUCGCCccuGGCGAgCAcuacggUCGc -3' miRNA: 3'- cCGGa-----CUUGGAGCGG---UUGCU-GUa-----AGC- -5' |
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22368 | 5' | -52.3 | NC_005045.1 | + | 22409 | 0.66 | 0.8143 |
Target: 5'- uGGCCgcgaccguaGugCUCGCCAgggGCGAgGUUCc -3' miRNA: 3'- -CCGGac-------UugGAGCGGU---UGCUgUAAGc -5' |
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22368 | 5' | -52.3 | NC_005045.1 | + | 22448 | 0.73 | 0.396443 |
Target: 5'- aGGuCCUGAACCUCGUgGACGAgGc--- -3' miRNA: 3'- -CC-GGACUUGGAGCGgUUGCUgUaagc -5' |
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22368 | 5' | -52.3 | NC_005045.1 | + | 22520 | 0.66 | 0.833187 |
Target: 5'- -cCCUuGGCCUCGUCcACGAgGUUCa -3' miRNA: 3'- ccGGAcUUGGAGCGGuUGCUgUAAGc -5' |
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22368 | 5' | -52.3 | NC_005045.1 | + | 25070 | 0.7 | 0.59662 |
Target: 5'- uGGCCUGGACCggCGCCAcuugGGCGgugaUCa -3' miRNA: 3'- -CCGGACUUGGa-GCGGUug--CUGUa---AGc -5' |
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22368 | 5' | -52.3 | NC_005045.1 | + | 28595 | 0.71 | 0.507939 |
Target: 5'- cGGCCUGAGCCUCGgcgcuuCCGcCGGCuagCa -3' miRNA: 3'- -CCGGACUUGGAGC------GGUuGCUGuaaGc -5' |
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22368 | 5' | -52.3 | NC_005045.1 | + | 28744 | 0.71 | 0.548413 |
Target: 5'- aGCCUGAGCCUggauggagugcgccUGCuCGGCGAgGUUCc -3' miRNA: 3'- cCGGACUUGGA--------------GCG-GUUGCUgUAAGc -5' |
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22368 | 5' | -52.3 | NC_005045.1 | + | 29886 | 0.72 | 0.497212 |
Target: 5'- uGGCCUGAGCaUCGCUccAGCGGCccuccUCGa -3' miRNA: 3'- -CCGGACUUGgAGCGG--UUGCUGua---AGC- -5' |
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22368 | 5' | -52.3 | NC_005045.1 | + | 31191 | 0.67 | 0.739157 |
Target: 5'- cGCCUGAGCaagccgcgcaguggUUCGCCGAgGACAc--- -3' miRNA: 3'- cCGGACUUG--------------GAGCGGUUgCUGUaagc -5' |
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22368 | 5' | -52.3 | NC_005045.1 | + | 32928 | 0.67 | 0.738073 |
Target: 5'- uGGCCUGGGCCaccuugggacucaUCGCCccaggguuccgcagGGCaGCGUUCa -3' miRNA: 3'- -CCGGACUUGG-------------AGCGG--------------UUGcUGUAAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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