miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22369 3' -49.5 NC_005045.1 + 35686 1.08 0.002808
Target:  5'- gGACAACACCAACAUCCAAUUGGCCGUg -3'
miRNA:   3'- -CUGUUGUGGUUGUAGGUUAACCGGCA- -5'
22369 3' -49.5 NC_005045.1 + 9739 0.77 0.351521
Target:  5'- uACGACGCCGACAgCC--UUGGCCGg -3'
miRNA:   3'- cUGUUGUGGUUGUaGGuuAACCGGCa -5'
22369 3' -49.5 NC_005045.1 + 18768 0.75 0.418523
Target:  5'- cGGCGGCGCCAGCAucacgcUCCGGccagGGCCGc -3'
miRNA:   3'- -CUGUUGUGGUUGU------AGGUUaa--CCGGCa -5'
22369 3' -49.5 NC_005045.1 + 18613 0.73 0.560788
Target:  5'- gGGCGGCACgAGCGUCCAccugGaGCCGUc -3'
miRNA:   3'- -CUGUUGUGgUUGUAGGUuaa-C-CGGCA- -5'
22369 3' -49.5 NC_005045.1 + 5053 0.71 0.635894
Target:  5'- gGACGGCGCgGauggcgcuggccuucACGUCCAGcagcUUGGCCGg -3'
miRNA:   3'- -CUGUUGUGgU---------------UGUAGGUU----AACCGGCa -5'
22369 3' -49.5 NC_005045.1 + 31280 0.71 0.642973
Target:  5'- aACAAUGCCucUAUCCuggGAUUGGCCGg -3'
miRNA:   3'- cUGUUGUGGuuGUAGG---UUAACCGGCa -5'
22369 3' -49.5 NC_005045.1 + 14915 0.71 0.677086
Target:  5'- cGGCAgucGCGCCAGCAUCCGccgcgacGUUGGgCa- -3'
miRNA:   3'- -CUGU---UGUGGUUGUAGGU-------UAACCgGca -5'
22369 3' -49.5 NC_005045.1 + 37753 0.71 0.678257
Target:  5'- uGGCGACGCCAcCGUCCAcgUagucgcugcGGUCGUu -3'
miRNA:   3'- -CUGUUGUGGUuGUAGGUuaA---------CCGGCA- -5'
22369 3' -49.5 NC_005045.1 + 18362 0.7 0.724531
Target:  5'- cGCGAgAUCGAaGUCCGGUUGGCCu- -3'
miRNA:   3'- cUGUUgUGGUUgUAGGUUAACCGGca -5'
22369 3' -49.5 NC_005045.1 + 13836 0.7 0.724531
Target:  5'- gGACAGCGCCAug--CCAAU-GGCCuGUa -3'
miRNA:   3'- -CUGUUGUGGUuguaGGUUAaCCGG-CA- -5'
22369 3' -49.5 NC_005045.1 + 26154 0.69 0.758175
Target:  5'- aGGCAGCuACgGGCcgCCAcggUGGCCGa -3'
miRNA:   3'- -CUGUUG-UGgUUGuaGGUua-ACCGGCa -5'
22369 3' -49.5 NC_005045.1 + 26222 0.69 0.765847
Target:  5'- cGACcGCACCGACAUcaagggcguagaccCCAAcaaGGCCGg -3'
miRNA:   3'- -CUGuUGUGGUUGUA--------------GGUUaa-CCGGCa -5'
22369 3' -49.5 NC_005045.1 + 26101 0.69 0.779886
Target:  5'- uGCGcCACCAGCAUCgCAAUgcugcGGCCa- -3'
miRNA:   3'- cUGUuGUGGUUGUAG-GUUAa----CCGGca -5'
22369 3' -49.5 NC_005045.1 + 26375 0.69 0.790485
Target:  5'- gGACAACGCCAGCA-CCAAccccaaccUU-GCCGa -3'
miRNA:   3'- -CUGUUGUGGUUGUaGGUU--------AAcCGGCa -5'
22369 3' -49.5 NC_005045.1 + 30741 0.68 0.800893
Target:  5'- aACGACACCGAgaccaucggaacCGUCC---UGGCCGa -3'
miRNA:   3'- cUGUUGUGGUU------------GUAGGuuaACCGGCa -5'
22369 3' -49.5 NC_005045.1 + 26594 0.68 0.800893
Target:  5'- uGGCGACGCCGAUAUCCAcgUuGaaGUg -3'
miRNA:   3'- -CUGUUGUGGUUGUAGGUuaAcCggCA- -5'
22369 3' -49.5 NC_005045.1 + 4580 0.68 0.800893
Target:  5'- aGGCugguGCGCCAGCcuUCCAccgUGGCCa- -3'
miRNA:   3'- -CUGu---UGUGGUUGu-AGGUua-ACCGGca -5'
22369 3' -49.5 NC_005045.1 + 31674 0.68 0.811099
Target:  5'- --aGGCACC-GCGUCgAGUUGGCCc- -3'
miRNA:   3'- cugUUGUGGuUGUAGgUUAACCGGca -5'
22369 3' -49.5 NC_005045.1 + 30089 0.68 0.830851
Target:  5'- gGGCAGCGCgguucgCAugAUCCAGgcGGCCa- -3'
miRNA:   3'- -CUGUUGUG------GUugUAGGUUaaCCGGca -5'
22369 3' -49.5 NC_005045.1 + 10268 0.68 0.840372
Target:  5'- -cCAGCACCAGaccggaGUCCA---GGCCGg -3'
miRNA:   3'- cuGUUGUGGUUg-----UAGGUuaaCCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.