Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 22369 | 3' | -49.5 | NC_005045.1 | + | 37753 | 0.71 | 0.678257 |
|
Target: 5'- uGGCGACGCCAcCGUCCAcgUagucgcugcGGUCGUu -3' miRNA: 3'- -CUGUUGUGGUuGUAGGUuaA---------CCGGCA- -5' |
|||||||
| 22369 | 3' | -49.5 | NC_005045.1 | + | 14915 | 0.71 | 0.677086 |
|
Target: 5'- cGGCAgucGCGCCAGCAUCCGccgcgacGUUGGgCa- -3' miRNA: 3'- -CUGU---UGUGGUUGUAGGU-------UAACCgGca -5' |
|||||||
| 22369 | 3' | -49.5 | NC_005045.1 | + | 31280 | 0.71 | 0.642973 |
|
Target: 5'- aACAAUGCCucUAUCCuggGAUUGGCCGg -3' miRNA: 3'- cUGUUGUGGuuGUAGG---UUAACCGGCa -5' |
|||||||
| 22369 | 3' | -49.5 | NC_005045.1 | + | 5053 | 0.71 | 0.635894 |
|
Target: 5'- gGACGGCGCgGauggcgcuggccuucACGUCCAGcagcUUGGCCGg -3' miRNA: 3'- -CUGUUGUGgU---------------UGUAGGUU----AACCGGCa -5' |
|||||||
| 22369 | 3' | -49.5 | NC_005045.1 | + | 18613 | 0.73 | 0.560788 |
|
Target: 5'- gGGCGGCACgAGCGUCCAccugGaGCCGUc -3' miRNA: 3'- -CUGUUGUGgUUGUAGGUuaa-C-CGGCA- -5' |
|||||||
| 22369 | 3' | -49.5 | NC_005045.1 | + | 18768 | 0.75 | 0.418523 |
|
Target: 5'- cGGCGGCGCCAGCAucacgcUCCGGccagGGCCGc -3' miRNA: 3'- -CUGUUGUGGUUGU------AGGUUaa--CCGGCa -5' |
|||||||
| 22369 | 3' | -49.5 | NC_005045.1 | + | 9739 | 0.77 | 0.351521 |
|
Target: 5'- uACGACGCCGACAgCC--UUGGCCGg -3' miRNA: 3'- cUGUUGUGGUUGUaGGuuAACCGGCa -5' |
|||||||
| 22369 | 3' | -49.5 | NC_005045.1 | + | 35686 | 1.08 | 0.002808 |
|
Target: 5'- gGACAACACCAACAUCCAAUUGGCCGUg -3' miRNA: 3'- -CUGUUGUGGUUGUAGGUUAACCGGCA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home