Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2237 | 3' | -62.7 | NC_001405.1 | + | 8963 | 0.66 | 0.268262 |
Target: 5'- cGCCACCGUgGAGcG-AGCCGGacGCGg -3' miRNA: 3'- aCGGUGGCGgCUC-CgUUGGCCccUGC- -5' |
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2237 | 3' | -62.7 | NC_001405.1 | + | 26241 | 0.66 | 0.260979 |
Target: 5'- cGCCGCCGCCacccacggacgagGAGGaauACU-GGGACa -3' miRNA: 3'- aCGGUGGCGG-------------CUCCgu-UGGcCCCUGc -5' |
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2237 | 3' | -62.7 | NC_001405.1 | + | 6616 | 0.66 | 0.255141 |
Target: 5'- cGCCuGCUGcCCGGGGUcuuuACCGuGGACGc -3' miRNA: 3'- aCGG-UGGC-GGCUCCGu---UGGCcCCUGC- -5' |
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2237 | 3' | -62.7 | NC_001405.1 | + | 23917 | 0.66 | 0.248151 |
Target: 5'- aGCCGCuuuuuugggggcgCGCgggGAGGCGGCggcacggcgaCGGGGACGa -3' miRNA: 3'- aCGGUG-------------GCGg--CUCCGUUG----------GCCCCUGC- -5' |
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2237 | 3' | -62.7 | NC_001405.1 | + | 26230 | 0.67 | 0.236452 |
Target: 5'- cGCgGCUGCUGAuagggcugcGGCGGCgGGGGGa- -3' miRNA: 3'- aCGgUGGCGGCU---------CCGUUGgCCCCUgc -5' |
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2237 | 3' | -62.7 | NC_001405.1 | + | 21870 | 0.67 | 0.223487 |
Target: 5'- cGCCugCGCCauagucaauacGGCcggucgcgaGACUGGGGGCGu -3' miRNA: 3'- aCGGugGCGGcu---------CCG---------UUGGCCCCUGC- -5' |
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2237 | 3' | -62.7 | NC_001405.1 | + | 11481 | 0.67 | 0.218924 |
Target: 5'- gGCgGCCGCCGAccuGGUAACCGcGuACGa -3' miRNA: 3'- aCGgUGGCGGCU---CCGUUGGCcCcUGC- -5' |
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2237 | 3' | -62.7 | NC_001405.1 | + | 13463 | 0.67 | 0.207865 |
Target: 5'- gGCUACCGCCcccuGGUuucuacACCGGGGGa- -3' miRNA: 3'- aCGGUGGCGGcu--CCGu-----UGGCCCCUgc -5' |
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2237 | 3' | -62.7 | NC_001405.1 | + | 26795 | 0.68 | 0.182312 |
Target: 5'- cUGCCGCUGCCGcuGCcGCCGgugcaguaGGGGCu -3' miRNA: 3'- -ACGGUGGCGGCucCGuUGGC--------CCCUGc -5' |
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2237 | 3' | -62.7 | NC_001405.1 | + | 16178 | 0.69 | 0.163911 |
Target: 5'- cGCCACCGCCGccgacccGGCAcuGCCGcccaacgcgcGGcGGCGg -3' miRNA: 3'- aCGGUGGCGGCu------CCGU--UGGC----------CC-CUGC- -5' |
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2237 | 3' | -62.7 | NC_001405.1 | + | 23821 | 0.69 | 0.159579 |
Target: 5'- -uCCGCCGUCGAGGUcgauGGCCGcGGGCu -3' miRNA: 3'- acGGUGGCGGCUCCG----UUGGCcCCUGc -5' |
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2237 | 3' | -62.7 | NC_001405.1 | + | 13138 | 0.7 | 0.147196 |
Target: 5'- aGCCGCgCGCUGGGGCAGgaGGacacGGGCa -3' miRNA: 3'- aCGGUG-GCGGCUCCGUUggCC----CCUGc -5' |
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2237 | 3' | -62.7 | NC_001405.1 | + | 11111 | 0.73 | 0.087223 |
Target: 5'- uUGCCGCUGCUGAGGag---GGGGGCGc -3' miRNA: 3'- -ACGGUGGCGGCUCCguuggCCCCUGC- -5' |
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2237 | 3' | -62.7 | NC_001405.1 | + | 12144 | 0.76 | 0.046779 |
Target: 5'- aGCCgACgCGCCcugGAGGCAGCUGGGGcCGg -3' miRNA: 3'- aCGG-UG-GCGG---CUCCGUUGGCCCCuGC- -5' |
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2237 | 3' | -62.7 | NC_001405.1 | + | 10358 | 0.76 | 0.04546 |
Target: 5'- gGCCAgCguagggugGCCGGGGCu-CCGGGGGCGa -3' miRNA: 3'- aCGGUgG--------CGGCUCCGuuGGCCCCUGC- -5' |
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2237 | 3' | -62.7 | NC_001405.1 | + | 16260 | 0.77 | 0.03939 |
Target: 5'- gGCCGCCGCCGcgcguuGGGCGgcaguGCCGGGucGGCGg -3' miRNA: 3'- aCGGUGGCGGC------UCCGU-----UGGCCC--CUGC- -5' |
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2237 | 3' | -62.7 | NC_001405.1 | + | 17301 | 1.07 | 0.000154 |
Target: 5'- cUGCCACCGCCGAGGCAACCGGGGACGu -3' miRNA: 3'- -ACGGUGGCGGCUCCGUUGGCCCCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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