miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22370 3' -51.4 NC_005045.1 + 36188 1.13 0.000887
Target:  5'- uCAACCGCUUGCAGAACACCACCAUGCa -3'
miRNA:   3'- -GUUGGCGAACGUCUUGUGGUGGUACG- -5'
22370 3' -51.4 NC_005045.1 + 10183 0.84 0.093557
Target:  5'- --cCCGC-UGCGGGACACCacGCCAUGCg -3'
miRNA:   3'- guuGGCGaACGUCUUGUGG--UGGUACG- -5'
22370 3' -51.4 NC_005045.1 + 26808 0.78 0.211687
Target:  5'- -cGCCGCUggGCAGAGCggGCCGCCuacgGCa -3'
miRNA:   3'- guUGGCGAa-CGUCUUG--UGGUGGua--CG- -5'
22370 3' -51.4 NC_005045.1 + 32166 0.76 0.285862
Target:  5'- aCGACCGagccGCAGAGCACgGCCA-GCg -3'
miRNA:   3'- -GUUGGCgaa-CGUCUUGUGgUGGUaCG- -5'
22370 3' -51.4 NC_005045.1 + 36976 0.75 0.317518
Target:  5'- gCAACCGCgcagUGUGGGAUuCCACCAcugGCg -3'
miRNA:   3'- -GUUGGCGa---ACGUCUUGuGGUGGUa--CG- -5'
22370 3' -51.4 NC_005045.1 + 18120 0.75 0.351742
Target:  5'- uCGACCGCaucccCAGGGCACgCAUCAUGCu -3'
miRNA:   3'- -GUUGGCGaac--GUCUUGUG-GUGGUACG- -5'
22370 3' -51.4 NC_005045.1 + 16236 0.74 0.398077
Target:  5'- gGACCGg-UGCAGGACACCccgcACCAaGCc -3'
miRNA:   3'- gUUGGCgaACGUCUUGUGG----UGGUaCG- -5'
22370 3' -51.4 NC_005045.1 + 34446 0.73 0.427693
Target:  5'- cCAGCgGCcUGaccAGCGCCACCAUGCu -3'
miRNA:   3'- -GUUGgCGaACgucUUGUGGUGGUACG- -5'
22370 3' -51.4 NC_005045.1 + 32853 0.71 0.512525
Target:  5'- gGACCGCUUcGUGGAGCACgguCACCggGUu -3'
miRNA:   3'- gUUGGCGAA-CGUCUUGUG---GUGGuaCG- -5'
22370 3' -51.4 NC_005045.1 + 14103 0.71 0.523636
Target:  5'- gGGCgGCUUGCAGAGCGuuGaguuguugagUCAUGCg -3'
miRNA:   3'- gUUGgCGAACGUCUUGUggU----------GGUACG- -5'
22370 3' -51.4 NC_005045.1 + 40583 0.71 0.534839
Target:  5'- gCAGCCGC---CAGGGCugCGCCGcGCa -3'
miRNA:   3'- -GUUGGCGaacGUCUUGugGUGGUaCG- -5'
22370 3' -51.4 NC_005045.1 + 16926 0.7 0.580396
Target:  5'- aAGCUGCUggacgaaGCGGAcauCAUCAUCGUGCa -3'
miRNA:   3'- gUUGGCGAa------CGUCUu--GUGGUGGUACG- -5'
22370 3' -51.4 NC_005045.1 + 22107 0.7 0.603498
Target:  5'- -cACCGCguaggaGCGGAGCG--ACCAUGCg -3'
miRNA:   3'- guUGGCGaa----CGUCUUGUggUGGUACG- -5'
22370 3' -51.4 NC_005045.1 + 39541 0.69 0.638329
Target:  5'- aGGCCaCUUGCucAGGACACUcUCGUGCg -3'
miRNA:   3'- gUUGGcGAACG--UCUUGUGGuGGUACG- -5'
22370 3' -51.4 NC_005045.1 + 2850 0.69 0.649942
Target:  5'- gGGCCGCUgcaacGCAGccGACAUggCGCUGUGCg -3'
miRNA:   3'- gUUGGCGAa----CGUC--UUGUG--GUGGUACG- -5'
22370 3' -51.4 NC_005045.1 + 32205 0.69 0.649942
Target:  5'- --cCCGaCUUGCccAGCGCCGCCA-GCa -3'
miRNA:   3'- guuGGC-GAACGucUUGUGGUGGUaCG- -5'
22370 3' -51.4 NC_005045.1 + 32727 0.69 0.661537
Target:  5'- aGGCagaGCUgGCAGuguCGCCGCCcUGCa -3'
miRNA:   3'- gUUGg--CGAaCGUCuu-GUGGUGGuACG- -5'
22370 3' -51.4 NC_005045.1 + 18594 0.69 0.661537
Target:  5'- cCAACCGCUUcacaggGCGGGGCGgCACgA-GCg -3'
miRNA:   3'- -GUUGGCGAA------CGUCUUGUgGUGgUaCG- -5'
22370 3' -51.4 NC_005045.1 + 7983 0.69 0.669636
Target:  5'- aGGCgCGCUUGCAGGucugcugcaacaugAuCGCCGCCA-GCc -3'
miRNA:   3'- gUUG-GCGAACGUCU--------------U-GUGGUGGUaCG- -5'
22370 3' -51.4 NC_005045.1 + 13141 0.69 0.684622
Target:  5'- --uCCGCgacagUGCAGAG-GCCACCA-GCc -3'
miRNA:   3'- guuGGCGa----ACGUCUUgUGGUGGUaCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.