Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22370 | 3' | -51.4 | NC_005045.1 | + | 33259 | 0.66 | 0.824465 |
Target: 5'- uGACCGaggagGCuagccuGGAgACCAUCGUGCa -3' miRNA: 3'- gUUGGCgaa--CGu-----CUUgUGGUGGUACG- -5' |
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22370 | 3' | -51.4 | NC_005045.1 | + | 4065 | 0.67 | 0.752112 |
Target: 5'- uCGGCCuGCUgGCAG-GCGCCugCuacUGCa -3' miRNA: 3'- -GUUGG-CGAaCGUCuUGUGGugGu--ACG- -5' |
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22370 | 3' | -51.4 | NC_005045.1 | + | 32757 | 0.67 | 0.762962 |
Target: 5'- -cACCGCUccaggacgUGUAG-GCACCaacccggugACCGUGCu -3' miRNA: 3'- guUGGCGA--------ACGUCuUGUGG---------UGGUACG- -5' |
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22370 | 3' | -51.4 | NC_005045.1 | + | 32820 | 0.67 | 0.773663 |
Target: 5'- -uACCGUcgGCGugauGAACGCUGCCcUGCg -3' miRNA: 3'- guUGGCGaaCGU----CUUGUGGUGGuACG- -5' |
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22370 | 3' | -51.4 | NC_005045.1 | + | 20830 | 0.67 | 0.784201 |
Target: 5'- gCAGuCCGCUUGCGccgccgaGACGCCAUCGcaguggaguUGCg -3' miRNA: 3'- -GUU-GGCGAACGUc------UUGUGGUGGU---------ACG- -5' |
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22370 | 3' | -51.4 | NC_005045.1 | + | 14131 | 0.67 | 0.784201 |
Target: 5'- gCggUCGCaucuucccgGCGG-GCACCGCCAUGg -3' miRNA: 3'- -GuuGGCGaa-------CGUCuUGUGGUGGUACg -5' |
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22370 | 3' | -51.4 | NC_005045.1 | + | 2318 | 0.66 | 0.804736 |
Target: 5'- uCAACCGC--GCuaucGACGCCAuCCGUGUc -3' miRNA: 3'- -GUUGGCGaaCGuc--UUGUGGU-GGUACG- -5' |
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22370 | 3' | -51.4 | NC_005045.1 | + | 13495 | 0.66 | 0.814707 |
Target: 5'- cCGACUGCcacaAGGACACCGCCGc-- -3' miRNA: 3'- -GUUGGCGaacgUCUUGUGGUGGUacg -5' |
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22370 | 3' | -51.4 | NC_005045.1 | + | 38206 | 0.66 | 0.814707 |
Target: 5'- aGACCGCgagUGCuGAGCGgCUggGCC-UGCu -3' miRNA: 3'- gUUGGCGa--ACGuCUUGU-GG--UGGuACG- -5' |
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22370 | 3' | -51.4 | NC_005045.1 | + | 7021 | 0.68 | 0.718798 |
Target: 5'- -cGCCGaCUUGggcuGGAGCACCACCcaccGCg -3' miRNA: 3'- guUGGC-GAACg---UCUUGUGGUGGua--CG- -5' |
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22370 | 3' | -51.4 | NC_005045.1 | + | 30238 | 0.68 | 0.718798 |
Target: 5'- aGGCCGa--GCAGGGCGCCgugGCCuggGCg -3' miRNA: 3'- gUUGGCgaaCGUCUUGUGG---UGGua-CG- -5' |
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22370 | 3' | -51.4 | NC_005045.1 | + | 32572 | 0.68 | 0.696088 |
Target: 5'- aAGCCGCUc-CAGGGCAUCGCCGc-- -3' miRNA: 3'- gUUGGCGAacGUCUUGUGGUGGUacg -5' |
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22370 | 3' | -51.4 | NC_005045.1 | + | 26808 | 0.78 | 0.211687 |
Target: 5'- -cGCCGCUggGCAGAGCggGCCGCCuacgGCa -3' miRNA: 3'- guUGGCGAa-CGUCUUG--UGGUGGua--CG- -5' |
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22370 | 3' | -51.4 | NC_005045.1 | + | 36976 | 0.75 | 0.317518 |
Target: 5'- gCAACCGCgcagUGUGGGAUuCCACCAcugGCg -3' miRNA: 3'- -GUUGGCGa---ACGUCUUGuGGUGGUa--CG- -5' |
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22370 | 3' | -51.4 | NC_005045.1 | + | 18120 | 0.75 | 0.351742 |
Target: 5'- uCGACCGCaucccCAGGGCACgCAUCAUGCu -3' miRNA: 3'- -GUUGGCGaac--GUCUUGUG-GUGGUACG- -5' |
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22370 | 3' | -51.4 | NC_005045.1 | + | 34446 | 0.73 | 0.427693 |
Target: 5'- cCAGCgGCcUGaccAGCGCCACCAUGCu -3' miRNA: 3'- -GUUGgCGaACgucUUGUGGUGGUACG- -5' |
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22370 | 3' | -51.4 | NC_005045.1 | + | 16926 | 0.7 | 0.580396 |
Target: 5'- aAGCUGCUggacgaaGCGGAcauCAUCAUCGUGCa -3' miRNA: 3'- gUUGGCGAa------CGUCUu--GUGGUGGUACG- -5' |
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22370 | 3' | -51.4 | NC_005045.1 | + | 2850 | 0.69 | 0.649942 |
Target: 5'- gGGCCGCUgcaacGCAGccGACAUggCGCUGUGCg -3' miRNA: 3'- gUUGGCGAa----CGUC--UUGUG--GUGGUACG- -5' |
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22370 | 3' | -51.4 | NC_005045.1 | + | 18594 | 0.69 | 0.661537 |
Target: 5'- cCAACCGCUUcacaggGCGGGGCGgCACgA-GCg -3' miRNA: 3'- -GUUGGCGAA------CGUCUUGUgGUGgUaCG- -5' |
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22370 | 3' | -51.4 | NC_005045.1 | + | 13141 | 0.69 | 0.684622 |
Target: 5'- --uCCGCgacagUGCAGAG-GCCACCA-GCc -3' miRNA: 3'- guuGGCGa----ACGUCUUgUGGUGGUaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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