miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22371 5' -58 NC_005045.1 + 27429 0.73 0.150908
Target:  5'- uGCCGGGGCCg-GCUGAguACauccagGCGGCGg -3'
miRNA:   3'- -CGGUCCCGGagCGACU--UGa-----UGCCGUu -5'
22371 5' -58 NC_005045.1 + 8625 0.72 0.193543
Target:  5'- cGCCGGGGCCUCgguGCUGG----UGGCAGc -3'
miRNA:   3'- -CGGUCCCGGAG---CGACUugauGCCGUU- -5'
22371 5' -58 NC_005045.1 + 15363 0.67 0.377734
Target:  5'- gGCCAa-GCCUCcccuGCUGGaaccGCUGCGGCGGg -3'
miRNA:   3'- -CGGUccCGGAG----CGACU----UGAUGCCGUU- -5'
22371 5' -58 NC_005045.1 + 7634 0.67 0.386785
Target:  5'- cGCCAGGGCUgcCGCUGcuguacAGCgaaaGGCAGc -3'
miRNA:   3'- -CGGUCCCGGa-GCGAC------UUGaug-CCGUU- -5'
22371 5' -58 NC_005045.1 + 16878 0.67 0.395978
Target:  5'- uGCCAGGGCgCccCGCUGGACgACcuGCAc -3'
miRNA:   3'- -CGGUCCCG-Ga-GCGACUUGaUGc-CGUu -5'
22371 5' -58 NC_005045.1 + 4214 0.66 0.464085
Target:  5'- gGCCGGGGCCUa-CUGAccggGCUGaaGCGu -3'
miRNA:   3'- -CGGUCCCGGAgcGACU----UGAUgcCGUu -5'
22371 5' -58 NC_005045.1 + 26424 0.66 0.474311
Target:  5'- aGCguGGGCUacaUCGCuUGGcagcuCUACGGUAAg -3'
miRNA:   3'- -CGguCCCGG---AGCG-ACUu----GAUGCCGUU- -5'
22371 5' -58 NC_005045.1 + 36953 1.07 0.000421
Target:  5'- uGCCAGGGCCUCGCUGAACUACGGCAAc -3'
miRNA:   3'- -CGGUCCCGGAGCGACUUGAUGCCGUU- -5'
22371 5' -58 NC_005045.1 + 8539 0.66 0.453975
Target:  5'- gGCgCAGGGCCUCGUc--GCUcagcCGGCGc -3'
miRNA:   3'- -CG-GUCCCGGAGCGacuUGAu---GCCGUu -5'
22371 5' -58 NC_005045.1 + 23114 0.66 0.443986
Target:  5'- gGCCuGGGCCUgcgcggccUGCUGAcGCUGCuGCu- -3'
miRNA:   3'- -CGGuCCCGGA--------GCGACU-UGAUGcCGuu -5'
22371 5' -58 NC_005045.1 + 9531 0.67 0.41478
Target:  5'- gGCCAGGGCgacgccCUCGUUGGGCcgugcaucagagUACaGGCGc -3'
miRNA:   3'- -CGGUCCCG------GAGCGACUUG------------AUG-CCGUu -5'
22371 5' -58 NC_005045.1 + 39190 0.67 0.404371
Target:  5'- cGCgGGuaGGCCguuguagaucgauUCGCgGGACUGCGGCGu -3'
miRNA:   3'- -CGgUC--CCGG-------------AGCGaCUUGAUGCCGUu -5'
22371 5' -58 NC_005045.1 + 34476 0.67 0.395978
Target:  5'- -aCGGGGCCgaGCUGGuGCUcacGCGGCAc -3'
miRNA:   3'- cgGUCCCGGagCGACU-UGA---UGCCGUu -5'
22371 5' -58 NC_005045.1 + 23470 0.67 0.385873
Target:  5'- aCCGGGGCCg-GCUGAGCgggugcuUGCGGa-- -3'
miRNA:   3'- cGGUCCCGGagCGACUUG-------AUGCCguu -5'
22371 5' -58 NC_005045.1 + 11879 0.67 0.368826
Target:  5'- aUCAGGGCCUCGCaGcGCUccaGGUAGc -3'
miRNA:   3'- cGGUCCCGGAGCGaCuUGAug-CCGUU- -5'
22371 5' -58 NC_005045.1 + 27861 0.7 0.246363
Target:  5'- gGCCAcGGGCUguaGCUGAuAC-ACGGCAGa -3'
miRNA:   3'- -CGGU-CCCGGag-CGACU-UGaUGCCGUU- -5'
22371 5' -58 NC_005045.1 + 33938 0.72 0.198883
Target:  5'- uGCCAcGGaacacuGCCUCGCUGAugGCU-CGGCGGg -3'
miRNA:   3'- -CGGU-CC------CGGAGCGACU--UGAuGCCGUU- -5'
22371 5' -58 NC_005045.1 + 8778 0.74 0.138707
Target:  5'- gGCCuGGGUCgaaguacCGCuUGAGCUGCGGCGc -3'
miRNA:   3'- -CGGuCCCGGa------GCG-ACUUGAUGCCGUu -5'
22371 5' -58 NC_005045.1 + 33748 0.77 0.080361
Target:  5'- gGCCAGGGCCUUGaUGGucgGCGGCAGg -3'
miRNA:   3'- -CGGUCCCGGAGCgACUugaUGCCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.