miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22372 5' -51.3 NC_005045.1 + 32573 0.66 0.855101
Target:  5'- gGACAGcuuACGGCCuGACaggcuguGCAGcUCGCg -3'
miRNA:   3'- -CUGUUau-UGCCGGuCUG-------UGUCuGGCG- -5'
22372 5' -51.3 NC_005045.1 + 16218 0.66 0.837961
Target:  5'- cACGAauGCGGCgGGuucCugGGGCUGCa -3'
miRNA:   3'- cUGUUauUGCCGgUCu--GugUCUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 8791 0.66 0.863754
Target:  5'- cACAggAugGGCCGGcCugGGucgaaguACCGCu -3'
miRNA:   3'- cUGUuaUugCCGGUCuGugUC-------UGGCG- -5'
22372 5' -51.3 NC_005045.1 + 28816 0.66 0.855978
Target:  5'- cGACAucaGAcCGGCCAccaGCGgGGACCGUu -3'
miRNA:   3'- -CUGUua-UU-GCCGGUc--UGUgUCUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 24799 0.66 0.855978
Target:  5'- cGACAuc-GgGGUCAGGCccucggagUAGACCGCa -3'
miRNA:   3'- -CUGUuauUgCCGGUCUGu-------GUCUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 18678 0.66 0.855101
Target:  5'- cGGCAAUGaccugggGCGGCCcuGGC-CGGAgCGUg -3'
miRNA:   3'- -CUGUUAU-------UGCCGGu-CUGuGUCUgGCG- -5'
22372 5' -51.3 NC_005045.1 + 24037 0.66 0.837961
Target:  5'- gGACAG-AGCuGCCAGG-GCAGguGCCGCa -3'
miRNA:   3'- -CUGUUaUUGcCGGUCUgUGUC--UGGCG- -5'
22372 5' -51.3 NC_005045.1 + 9111 0.67 0.818993
Target:  5'- aGCAAcGACGGUCAcGAC-CAGuuguucccACCGCa -3'
miRNA:   3'- cUGUUaUUGCCGGU-CUGuGUC--------UGGCG- -5'
22372 5' -51.3 NC_005045.1 + 13541 0.67 0.788952
Target:  5'- cGACAuc-AUGGCC-GACGCuGcCCGCu -3'
miRNA:   3'- -CUGUuauUGCCGGuCUGUGuCuGGCG- -5'
22372 5' -51.3 NC_005045.1 + 32072 0.67 0.788952
Target:  5'- uGGCAGUugauGCGGUUAcuuucGGCGCuGGCCGUg -3'
miRNA:   3'- -CUGUUAu---UGCCGGU-----CUGUGuCUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 12055 0.67 0.778562
Target:  5'- uACGAaGAUGGCCGGAUGgAGAaaGCc -3'
miRNA:   3'- cUGUUaUUGCCGGUCUGUgUCUggCG- -5'
22372 5' -51.3 NC_005045.1 + 41258 0.67 0.799162
Target:  5'- aACGAcAGCaG-CAGGCACAGGCCGg -3'
miRNA:   3'- cUGUUaUUGcCgGUCUGUGUCUGGCg -5'
22372 5' -51.3 NC_005045.1 + 19599 0.67 0.816071
Target:  5'- gGACGAUGAagccgcuuCGGuaCCccucgggauuccggAGGCAUAGGCCGCg -3'
miRNA:   3'- -CUGUUAUU--------GCC--GG--------------UCUGUGUCUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 3115 0.67 0.80918
Target:  5'- uGACAgGUGACaugcCCGGACAgCGGACUGCc -3'
miRNA:   3'- -CUGU-UAUUGcc--GGUCUGU-GUCUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 21177 0.67 0.788952
Target:  5'- cACugu-GCGGUCAcGCACGGGCCGa -3'
miRNA:   3'- cUGuuauUGCCGGUcUGUGUCUGGCg -5'
22372 5' -51.3 NC_005045.1 + 7761 0.67 0.788952
Target:  5'- cGGCAGUAGCGcGCCcaAUcCAGcCCGCg -3'
miRNA:   3'- -CUGUUAUUGC-CGGucUGuGUCuGGCG- -5'
22372 5' -51.3 NC_005045.1 + 29981 0.68 0.746444
Target:  5'- gGACAAgaugcaGGCGGCCAacGGCucaagccugACGGAUCGCc -3'
miRNA:   3'- -CUGUUa-----UUGCCGGU--CUG---------UGUCUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 23044 0.68 0.746444
Target:  5'- aGCGucAGCaGGCCgcgcAGGCcCAGGCCGCg -3'
miRNA:   3'- cUGUuaUUG-CCGG----UCUGuGUCUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 25661 0.68 0.768006
Target:  5'- cACGAgauUGGaCCGGACG-AGACCGCc -3'
miRNA:   3'- cUGUUauuGCC-GGUCUGUgUCUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 2276 0.68 0.735466
Target:  5'- aGCAGcGGCGGCCAGguaGC-CGGcACUGCg -3'
miRNA:   3'- cUGUUaUUGCCGGUC---UGuGUC-UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.