miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22372 5' -51.3 NC_005045.1 + 37355 0.95 0.017904
Target:  5'- gGACAAUAACGGCCAGACcaAGACCGCc -3'
miRNA:   3'- -CUGUUAUUGCCGGUCUGugUCUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 23898 0.78 0.235406
Target:  5'- cGAcCGAUGGCGGCCuuGGugGCAGGguCCGCg -3'
miRNA:   3'- -CU-GUUAUUGCCGG--UCugUGUCU--GGCG- -5'
22372 5' -51.3 NC_005045.1 + 12560 0.76 0.332089
Target:  5'- uGCAGcu-CGGCCAGGCGCAucaacagcuuGGCCGCc -3'
miRNA:   3'- cUGUUauuGCCGGUCUGUGU----------CUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 9898 0.75 0.367182
Target:  5'- uGCAGguACGcacCCAGGCGCGGGCCGCc -3'
miRNA:   3'- cUGUUauUGCc--GGUCUGUGUCUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 4548 0.75 0.367182
Target:  5'- cGCAGc-ACGGUgGGACGCGGACCGg -3'
miRNA:   3'- cUGUUauUGCCGgUCUGUGUCUGGCg -5'
22372 5' -51.3 NC_005045.1 + 30872 0.74 0.414505
Target:  5'- cGACGAgAACGGUguGGCccuGGACCGCa -3'
miRNA:   3'- -CUGUUaUUGCCGguCUGug-UCUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 5745 0.74 0.42441
Target:  5'- aGGCGcggGUAGCGGCCAGcuuguGC-CAGGCCGa -3'
miRNA:   3'- -CUGU---UAUUGCCGGUC-----UGuGUCUGGCg -5'
22372 5' -51.3 NC_005045.1 + 27355 0.73 0.47596
Target:  5'- cACAcu-GCGGCCAGuCACGGcagguGCCGCc -3'
miRNA:   3'- cUGUuauUGCCGGUCuGUGUC-----UGGCG- -5'
22372 5' -51.3 NC_005045.1 + 22144 0.72 0.485569
Target:  5'- gGACGAUAuccauccaGCGGCCAGuCGCAucucggcGcACCGCg -3'
miRNA:   3'- -CUGUUAU--------UGCCGGUCuGUGU-------C-UGGCG- -5'
22372 5' -51.3 NC_005045.1 + 30546 0.71 0.541615
Target:  5'- cGCAAgcauGCGGgucugcucaCCAgcGACACGGGCCGCg -3'
miRNA:   3'- cUGUUau--UGCC---------GGU--CUGUGUCUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 37989 0.71 0.587022
Target:  5'- aGACGAUcGGCGGCCAGAgGgCAGcGCCuggGCg -3'
miRNA:   3'- -CUGUUA-UUGCCGGUCUgU-GUC-UGG---CG- -5'
22372 5' -51.3 NC_005045.1 + 5823 0.7 0.633084
Target:  5'- cGCGu---CGGCCuGGCACAagcuGGCCGCu -3'
miRNA:   3'- cUGUuauuGCCGGuCUGUGU----CUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 22512 0.7 0.644625
Target:  5'- gGGCGAUuACGuGCCAGgugGCGCGGaaGCCGUc -3'
miRNA:   3'- -CUGUUAuUGC-CGGUC---UGUGUC--UGGCG- -5'
22372 5' -51.3 NC_005045.1 + 12845 0.69 0.679124
Target:  5'- uGGCGAaacUGAUGGCCGG-CACuGACaUGCa -3'
miRNA:   3'- -CUGUU---AUUGCCGGUCuGUGuCUG-GCG- -5'
22372 5' -51.3 NC_005045.1 + 18819 0.69 0.690542
Target:  5'- aGCGGgcACGG-CAGGCGCAGcuCCGCc -3'
miRNA:   3'- cUGUUauUGCCgGUCUGUGUCu-GGCG- -5'
22372 5' -51.3 NC_005045.1 + 33450 0.69 0.690542
Target:  5'- cGAUAA-GACGGCCcaggAGGCGCcGugCGCc -3'
miRNA:   3'- -CUGUUaUUGCCGG----UCUGUGuCugGCG- -5'
22372 5' -51.3 NC_005045.1 + 12718 0.69 0.701898
Target:  5'- -----gGGCGGCUGGACgACAGACgCGUu -3'
miRNA:   3'- cuguuaUUGCCGGUCUG-UGUCUG-GCG- -5'
22372 5' -51.3 NC_005045.1 + 35506 0.69 0.701898
Target:  5'- uGACGAUAuc-GCCGGugGCGG-CUGCg -3'
miRNA:   3'- -CUGUUAUugcCGGUCugUGUCuGGCG- -5'
22372 5' -51.3 NC_005045.1 + 31206 0.69 0.701898
Target:  5'- cGCAGUGGuucGCCgaGGACACcGACCGCg -3'
miRNA:   3'- cUGUUAUUgc-CGG--UCUGUGuCUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 7249 0.69 0.713179
Target:  5'- gGACAuguucgaGGCCcGAgGCGGGCUGCg -3'
miRNA:   3'- -CUGUuauug--CCGGuCUgUGUCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.