miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22372 5' -51.3 NC_005045.1 + 2276 0.68 0.735466
Target:  5'- aGCAGcGGCGGCCAGguaGC-CGGcACUGCg -3'
miRNA:   3'- cUGUUaUUGCCGGUC---UGuGUC-UGGCG- -5'
22372 5' -51.3 NC_005045.1 + 3115 0.67 0.80918
Target:  5'- uGACAgGUGACaugcCCGGACAgCGGACUGCc -3'
miRNA:   3'- -CUGU-UAUUGcc--GGUCUGU-GUCUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 4548 0.75 0.367182
Target:  5'- cGCAGc-ACGGUgGGACGCGGACCGg -3'
miRNA:   3'- cUGUUauUGCCGgUCUGUGUCUGGCg -5'
22372 5' -51.3 NC_005045.1 + 5745 0.74 0.42441
Target:  5'- aGGCGcggGUAGCGGCCAGcuuguGC-CAGGCCGa -3'
miRNA:   3'- -CUGU---UAUUGCCGGUC-----UGuGUCUGGCg -5'
22372 5' -51.3 NC_005045.1 + 5823 0.7 0.633084
Target:  5'- cGCGu---CGGCCuGGCACAagcuGGCCGCu -3'
miRNA:   3'- cUGUuauuGCCGGuCUGUGU----CUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 7249 0.69 0.713179
Target:  5'- gGACAuguucgaGGCCcGAgGCGGGCUGCg -3'
miRNA:   3'- -CUGUuauug--CCGGuCUgUGUCUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 7761 0.67 0.788952
Target:  5'- cGGCAGUAGCGcGCCcaAUcCAGcCCGCg -3'
miRNA:   3'- -CUGUUAUUGC-CGGucUGuGUCuGGCG- -5'
22372 5' -51.3 NC_005045.1 + 8791 0.66 0.863754
Target:  5'- cACAggAugGGCCGGcCugGGucgaaguACCGCu -3'
miRNA:   3'- cUGUuaUugCCGGUCuGugUC-------UGGCG- -5'
22372 5' -51.3 NC_005045.1 + 9111 0.67 0.818993
Target:  5'- aGCAAcGACGGUCAcGAC-CAGuuguucccACCGCa -3'
miRNA:   3'- cUGUUaUUGCCGGU-CUGuGUC--------UGGCG- -5'
22372 5' -51.3 NC_005045.1 + 9898 0.75 0.367182
Target:  5'- uGCAGguACGcacCCAGGCGCGGGCCGCc -3'
miRNA:   3'- cUGUUauUGCc--GGUCUGUGUCUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 12055 0.67 0.778562
Target:  5'- uACGAaGAUGGCCGGAUGgAGAaaGCc -3'
miRNA:   3'- cUGUUaUUGCCGGUCUGUgUCUggCG- -5'
22372 5' -51.3 NC_005045.1 + 12560 0.76 0.332089
Target:  5'- uGCAGcu-CGGCCAGGCGCAucaacagcuuGGCCGCc -3'
miRNA:   3'- cUGUUauuGCCGGUCUGUGU----------CUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 12718 0.69 0.701898
Target:  5'- -----gGGCGGCUGGACgACAGACgCGUu -3'
miRNA:   3'- cuguuaUUGCCGGUCUG-UGUCUG-GCG- -5'
22372 5' -51.3 NC_005045.1 + 12845 0.69 0.679124
Target:  5'- uGGCGAaacUGAUGGCCGG-CACuGACaUGCa -3'
miRNA:   3'- -CUGUU---AUUGCCGGUCuGUGuCUG-GCG- -5'
22372 5' -51.3 NC_005045.1 + 13541 0.67 0.788952
Target:  5'- cGACAuc-AUGGCC-GACGCuGcCCGCu -3'
miRNA:   3'- -CUGUuauUGCCGGuCUGUGuCuGGCG- -5'
22372 5' -51.3 NC_005045.1 + 14120 0.68 0.754054
Target:  5'- cGGCGGUGGCGGCggUcgcaucuucccggcGGGCACcgccauGGGCCGCu -3'
miRNA:   3'- -CUGUUAUUGCCG--G--------------UCUGUG------UCUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 14217 0.68 0.746444
Target:  5'- uGCAGaAGCGGCCcauGGCGguGcCCGCc -3'
miRNA:   3'- cUGUUaUUGCCGGu--CUGUguCuGGCG- -5'
22372 5' -51.3 NC_005045.1 + 16218 0.66 0.837961
Target:  5'- cACGAauGCGGCgGGuucCugGGGCUGCa -3'
miRNA:   3'- cUGUUauUGCCGgUCu--GugUCUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 18678 0.66 0.855101
Target:  5'- cGGCAAUGaccugggGCGGCCcuGGC-CGGAgCGUg -3'
miRNA:   3'- -CUGUUAU-------UGCCGGu-CUGuGUCUgGCG- -5'
22372 5' -51.3 NC_005045.1 + 18819 0.69 0.690542
Target:  5'- aGCGGgcACGG-CAGGCGCAGcuCCGCc -3'
miRNA:   3'- cUGUUauUGCCgGUCUGUGUCu-GGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.