miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22372 5' -51.3 NC_005045.1 + 18678 0.66 0.855101
Target:  5'- cGGCAAUGaccugggGCGGCCcuGGC-CGGAgCGUg -3'
miRNA:   3'- -CUGUUAU-------UGCCGGu-CUGuGUCUgGCG- -5'
22372 5' -51.3 NC_005045.1 + 29981 0.68 0.746444
Target:  5'- gGACAAgaugcaGGCGGCCAacGGCucaagccugACGGAUCGCc -3'
miRNA:   3'- -CUGUUa-----UUGCCGGU--CUG---------UGUCUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 14120 0.68 0.754054
Target:  5'- cGGCGGUGGCGGCggUcgcaucuucccggcGGGCACcgccauGGGCCGCu -3'
miRNA:   3'- -CUGUUAUUGCCG--G--------------UCUGUG------UCUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 25661 0.68 0.768006
Target:  5'- cACGAgauUGGaCCGGACG-AGACCGCc -3'
miRNA:   3'- cUGUUauuGCC-GGUCUGUgUCUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 12055 0.67 0.778562
Target:  5'- uACGAaGAUGGCCGGAUGgAGAaaGCc -3'
miRNA:   3'- cUGUUaUUGCCGGUCUGUgUCUggCG- -5'
22372 5' -51.3 NC_005045.1 + 32072 0.67 0.788952
Target:  5'- uGGCAGUugauGCGGUUAcuuucGGCGCuGGCCGUg -3'
miRNA:   3'- -CUGUUAu---UGCCGGU-----CUGUGuCUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 13541 0.67 0.788952
Target:  5'- cGACAuc-AUGGCC-GACGCuGcCCGCu -3'
miRNA:   3'- -CUGUuauUGCCGGuCUGUGuCuGGCG- -5'
22372 5' -51.3 NC_005045.1 + 9111 0.67 0.818993
Target:  5'- aGCAAcGACGGUCAcGAC-CAGuuguucccACCGCa -3'
miRNA:   3'- cUGUUaUUGCCGGU-CUGuGUC--------UGGCG- -5'
22372 5' -51.3 NC_005045.1 + 16218 0.66 0.837961
Target:  5'- cACGAauGCGGCgGGuucCugGGGCUGCa -3'
miRNA:   3'- cUGUUauUGCCGgUCu--GugUCUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 23044 0.68 0.746444
Target:  5'- aGCGucAGCaGGCCgcgcAGGCcCAGGCCGCg -3'
miRNA:   3'- cUGUuaUUG-CCGG----UCUGuGUCUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 41301 0.68 0.724373
Target:  5'- cGCuGUAGCGGCCuaucaGGACGCccuGGACCuauGCa -3'
miRNA:   3'- cUGuUAUUGCCGG-----UCUGUG---UCUGG---CG- -5'
22372 5' -51.3 NC_005045.1 + 7249 0.69 0.713179
Target:  5'- gGACAuguucgaGGCCcGAgGCGGGCUGCg -3'
miRNA:   3'- -CUGUuauug--CCGGuCUgUGUCUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 30872 0.74 0.414505
Target:  5'- cGACGAgAACGGUguGGCccuGGACCGCa -3'
miRNA:   3'- -CUGUUaUUGCCGguCUGug-UCUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 5745 0.74 0.42441
Target:  5'- aGGCGcggGUAGCGGCCAGcuuguGC-CAGGCCGa -3'
miRNA:   3'- -CUGU---UAUUGCCGGUC-----UGuGUCUGGCg -5'
22372 5' -51.3 NC_005045.1 + 30546 0.71 0.541615
Target:  5'- cGCAAgcauGCGGgucugcucaCCAgcGACACGGGCCGCg -3'
miRNA:   3'- cUGUUau--UGCC---------GGU--CUGUGUCUGGCG- -5'
22372 5' -51.3 NC_005045.1 + 37989 0.71 0.587022
Target:  5'- aGACGAUcGGCGGCCAGAgGgCAGcGCCuggGCg -3'
miRNA:   3'- -CUGUUA-UUGCCGGUCUgU-GUC-UGG---CG- -5'
22372 5' -51.3 NC_005045.1 + 22512 0.7 0.644625
Target:  5'- gGGCGAUuACGuGCCAGgugGCGCGGaaGCCGUc -3'
miRNA:   3'- -CUGUUAuUGC-CGGUC---UGUGUC--UGGCG- -5'
22372 5' -51.3 NC_005045.1 + 12845 0.69 0.679124
Target:  5'- uGGCGAaacUGAUGGCCGG-CACuGACaUGCa -3'
miRNA:   3'- -CUGUU---AUUGCCGGUCuGUGuCUG-GCG- -5'
22372 5' -51.3 NC_005045.1 + 18819 0.69 0.690542
Target:  5'- aGCGGgcACGG-CAGGCGCAGcuCCGCc -3'
miRNA:   3'- cUGUUauUGCCgGUCUGUGUCu-GGCG- -5'
22372 5' -51.3 NC_005045.1 + 31206 0.69 0.701898
Target:  5'- cGCAGUGGuucGCCgaGGACACcGACCGCg -3'
miRNA:   3'- cUGUUAUUgc-CGG--UCUGUGuCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.