miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22373 3' -51.8 NC_005045.1 + 38812 1.13 0.00087
Target:  5'- aGCUGAUCAUGCAUUGGGACCUGCUGGc -3'
miRNA:   3'- -CGACUAGUACGUAACCCUGGACGACC- -5'
22373 3' -51.8 NC_005045.1 + 27753 0.74 0.378099
Target:  5'- aGCUGAcCAagcaGCAUUGGGACCUGaucaaGGa -3'
miRNA:   3'- -CGACUaGUa---CGUAACCCUGGACga---CC- -5'
22373 3' -51.8 NC_005045.1 + 7832 0.68 0.692457
Target:  5'- cGCUGAagGUGCggUGGG-CCUGUc-- -3'
miRNA:   3'- -CGACUagUACGuaACCCuGGACGacc -5'
22373 3' -51.8 NC_005045.1 + 19739 0.67 0.75906
Target:  5'- cGCggGGUUAUGCccuucugUGGGAUaagGCUGGu -3'
miRNA:   3'- -CGa-CUAGUACGua-----ACCCUGga-CGACC- -5'
22373 3' -51.8 NC_005045.1 + 25939 0.71 0.521324
Target:  5'- aGCUGGcCcgGCAggcgcucgaaGGGcACCUGCUGGc -3'
miRNA:   3'- -CGACUaGuaCGUaa--------CCC-UGGACGACC- -5'
22373 3' -51.8 NC_005045.1 + 34493 0.69 0.623535
Target:  5'- cGCUGGcccgCuGUGCAacGGGGCCgaGCUGGu -3'
miRNA:   3'- -CGACUa---G-UACGUaaCCCUGGa-CGACC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.