miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22374 3' -56.1 NC_005045.1 + 33113 0.65 0.605996
Target:  5'- cGugGAGGGuauccgcagccuGCUGGGCCuccgguccgaugcuGAcacGGCCCUGAg -3'
miRNA:   3'- -CugUUCCU------------UGACCUGG--------------UU---CCGGGGCU- -5'
22374 3' -56.1 NC_005045.1 + 16856 0.66 0.575907
Target:  5'- cGACGAGGugaucuACaUGGACUgccaGGGcGCCCCGc -3'
miRNA:   3'- -CUGUUCCu-----UG-ACCUGG----UUC-CGGGGCu -5'
22374 3' -56.1 NC_005045.1 + 8983 0.66 0.575907
Target:  5'- uGCucGGc-CUGGGCCAGGGaCCCCc- -3'
miRNA:   3'- cUGuuCCuuGACCUGGUUCC-GGGGcu -5'
22374 3' -56.1 NC_005045.1 + 11797 0.66 0.553835
Target:  5'- uGGCAuGuGGGCUGGcuACCuggagcgcugcGAGGCCCUGAu -3'
miRNA:   3'- -CUGUuC-CUUGACC--UGG-----------UUCCGGGGCU- -5'
22374 3' -56.1 NC_005045.1 + 12455 0.67 0.542892
Target:  5'- -uCAAGGcuCUGGAgaaaCAGGGCUUCGAg -3'
miRNA:   3'- cuGUUCCuuGACCUg---GUUCCGGGGCU- -5'
22374 3' -56.1 NC_005045.1 + 32791 0.67 0.53202
Target:  5'- -----cGAAcCUGGACCAggguaucgAGGCCCUGAg -3'
miRNA:   3'- cuguucCUU-GACCUGGU--------UCCGGGGCU- -5'
22374 3' -56.1 NC_005045.1 + 20850 0.67 0.53202
Target:  5'- cGGCcuGGAACUGGAuauccuCCAucguGGUCCCa- -3'
miRNA:   3'- -CUGuuCCUUGACCU------GGUu---CCGGGGcu -5'
22374 3' -56.1 NC_005045.1 + 16631 0.67 0.499911
Target:  5'- --gAAGGGcgcgcugcacugGCUGGGCCGcaAGGCCgCUGAg -3'
miRNA:   3'- cugUUCCU------------UGACCUGGU--UCCGG-GGCU- -5'
22374 3' -56.1 NC_005045.1 + 41467 0.67 0.499911
Target:  5'- gGACGAGGccGAUgucaaGGCCAAGGCCaCCGc -3'
miRNA:   3'- -CUGUUCC--UUGac---CUGGUUCCGG-GGCu -5'
22374 3' -56.1 NC_005045.1 + 31067 0.68 0.448438
Target:  5'- uGGCGgaAGGAACUGGcucaguUCGAGGCUuaCCGAg -3'
miRNA:   3'- -CUGU--UCCUUGACCu-----GGUUCCGG--GGCU- -5'
22374 3' -56.1 NC_005045.1 + 41145 0.68 0.438496
Target:  5'- cGCcAGGAGgUGGACCGu-GCCCUGGa -3'
miRNA:   3'- cUGuUCCUUgACCUGGUucCGGGGCU- -5'
22374 3' -56.1 NC_005045.1 + 30352 0.7 0.37264
Target:  5'- cGCAGGGc-CUGGGCCGGGGCaaugCCCa- -3'
miRNA:   3'- cUGUUCCuuGACCUGGUUCCG----GGGcu -5'
22374 3' -56.1 NC_005045.1 + 8705 0.7 0.346549
Target:  5'- cGCAucAGGAggcGCUGccaccagcACCGAGGCCCCGGc -3'
miRNA:   3'- cUGU--UCCU---UGACc-------UGGUUCCGGGGCU- -5'
22374 3' -56.1 NC_005045.1 + 33013 0.72 0.255568
Target:  5'- -uCAAGGAGCUGGuaGCCuGGGgCCUGAc -3'
miRNA:   3'- cuGUUCCUUGACC--UGGuUCCgGGGCU- -5'
22374 3' -56.1 NC_005045.1 + 16491 0.74 0.20094
Target:  5'- uACGuGGAGCUGGGCCucaagaAGGGCgCCGAg -3'
miRNA:   3'- cUGUuCCUUGACCUGG------UUCCGgGGCU- -5'
22374 3' -56.1 NC_005045.1 + 39352 1.09 0.000536
Target:  5'- cGACAAGGAACUGGACCAAGGCCCCGAg -3'
miRNA:   3'- -CUGUUCCUUGACCUGGUUCCGGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.