miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22374 5' -52.8 NC_005045.1 + 4571 0.66 0.762766
Target:  5'- --cCAagGCGaagGCUGGuGCGCCAGCCUu -3'
miRNA:   3'- gaaGUcaUGUa--CGACC-UGUGGUCGGA- -5'
22374 5' -52.8 NC_005045.1 + 24609 0.66 0.762766
Target:  5'- --cCGG-GCGUGCUGGAgAaacuggaccugaCCGGCCUg -3'
miRNA:   3'- gaaGUCaUGUACGACCUgU------------GGUCGGA- -5'
22374 5' -52.8 NC_005045.1 + 34870 0.66 0.741022
Target:  5'- --gCAGUACGggaaggacgugGaCUGGACGCCAGUa- -3'
miRNA:   3'- gaaGUCAUGUa----------C-GACCUGUGGUCGga -5'
22374 5' -52.8 NC_005045.1 + 12262 0.66 0.741022
Target:  5'- --cCGGgcCGUGCuUGGuCGCCAGCUc -3'
miRNA:   3'- gaaGUCauGUACG-ACCuGUGGUCGGa -5'
22374 5' -52.8 NC_005045.1 + 13111 0.66 0.718791
Target:  5'- --aCGGUACAgccggUGUUGaaugcGAUACCAGCCg -3'
miRNA:   3'- gaaGUCAUGU-----ACGAC-----CUGUGGUCGGa -5'
22374 5' -52.8 NC_005045.1 + 13147 0.67 0.707527
Target:  5'- --aCAGUGCAga--GGcCACCAGCCUc -3'
miRNA:   3'- gaaGUCAUGUacgaCCuGUGGUCGGA- -5'
22374 5' -52.8 NC_005045.1 + 13918 0.67 0.706396
Target:  5'- --cCAGUAUgguuucaAUGCUGGcCACCAGUg- -3'
miRNA:   3'- gaaGUCAUG-------UACGACCuGUGGUCGga -5'
22374 5' -52.8 NC_005045.1 + 22648 0.67 0.696182
Target:  5'- --aCGGcuUGCAagcucUGCUGGAUAgCAGCCa -3'
miRNA:   3'- gaaGUC--AUGU-----ACGACCUGUgGUCGGa -5'
22374 5' -52.8 NC_005045.1 + 4950 0.68 0.63174
Target:  5'- gCUUCAGcgACAgcgcaccggccaagcUGCUGGACgugaaGCCAGCg- -3'
miRNA:   3'- -GAAGUCa-UGU---------------ACGACCUG-----UGGUCGga -5'
22374 5' -52.8 NC_005045.1 + 20973 0.68 0.604002
Target:  5'- -aUCAGUuCGgaugGGGCGCCGGCCUu -3'
miRNA:   3'- gaAGUCAuGUacgaCCUGUGGUCGGA- -5'
22374 5' -52.8 NC_005045.1 + 28745 0.69 0.558181
Target:  5'- --aCGGUcCccGCUGGugGCCGGUCUg -3'
miRNA:   3'- gaaGUCAuGuaCGACCugUGGUCGGA- -5'
22374 5' -52.8 NC_005045.1 + 31965 0.72 0.389753
Target:  5'- -aUCAGU-CG-GCUGGAUACCuGCCg -3'
miRNA:   3'- gaAGUCAuGUaCGACCUGUGGuCGGa -5'
22374 5' -52.8 NC_005045.1 + 4646 0.73 0.353068
Target:  5'- --aCGGUGgAagGCUGGcGCACCAGCCUu -3'
miRNA:   3'- gaaGUCAUgUa-CGACC-UGUGGUCGGA- -5'
22374 5' -52.8 NC_005045.1 + 41380 0.73 0.344287
Target:  5'- --gCAGUACcucGCUGGccguaACACCGGCCUg -3'
miRNA:   3'- gaaGUCAUGua-CGACC-----UGUGGUCGGA- -5'
22374 5' -52.8 NC_005045.1 + 20188 0.77 0.207212
Target:  5'- aCUUC-GUGCAUGgcCUGGACAgCAGCCa -3'
miRNA:   3'- -GAAGuCAUGUAC--GACCUGUgGUCGGa -5'
22374 5' -52.8 NC_005045.1 + 39388 1.07 0.001379
Target:  5'- gCUUCAGUACAUGCUGGACACCAGCCUc -3'
miRNA:   3'- -GAAGUCAUGUACGACCUGUGGUCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.