miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22375 5' -55.3 NC_005045.1 + 31033 0.66 0.650535
Target:  5'- gUUGGCaCCGUacucggcgccccGCAucgcauucagcuuaUCCGCGUUGcgcuUGAGCa -3'
miRNA:   3'- -AACCG-GGCA------------UGU--------------AGGUGCAGC----ACUCG- -5'
22375 5' -55.3 NC_005045.1 + 17808 0.66 0.631397
Target:  5'- -cGGCCCGUccaACAggcgCUugGauUCGUG-GCg -3'
miRNA:   3'- aaCCGGGCA---UGUa---GGugC--AGCACuCG- -5'
22375 5' -55.3 NC_005045.1 + 26593 0.66 0.62464
Target:  5'- gUGGCgacgCCG-AUAUCCACGUUGaaguguccacggauaUGGGCa -3'
miRNA:   3'- aACCG----GGCaUGUAGGUGCAGC---------------ACUCG- -5'
22375 5' -55.3 NC_005045.1 + 41062 0.67 0.542157
Target:  5'- -cGGCCCGUGCGgaggcCCugGagGUGcGUu -3'
miRNA:   3'- aaCCGGGCAUGUa----GGugCagCACuCG- -5'
22375 5' -55.3 NC_005045.1 + 32254 0.67 0.542157
Target:  5'- -aGGuUCCG-GCAUCCACGUCGgccccuGCg -3'
miRNA:   3'- aaCC-GGGCaUGUAGGUGCAGCacu---CG- -5'
22375 5' -55.3 NC_005045.1 + 16671 0.68 0.520413
Target:  5'- gUGGUCCGgaaguUCCccgGCGcCGUGGGCa -3'
miRNA:   3'- aACCGGGCaugu-AGG---UGCaGCACUCG- -5'
22375 5' -55.3 NC_005045.1 + 3882 0.69 0.427566
Target:  5'- -aGGCCCGUggcACAUCCGgucCGUgGUGguucacAGCg -3'
miRNA:   3'- aaCCGGGCA---UGUAGGU---GCAgCAC------UCG- -5'
22375 5' -55.3 NC_005045.1 + 21112 0.69 0.427566
Target:  5'- -cGGCCCGUGCGUgaCCGCacaGUG-GCa -3'
miRNA:   3'- aaCCGGGCAUGUA--GGUGcagCACuCG- -5'
22375 5' -55.3 NC_005045.1 + 33792 0.71 0.357284
Target:  5'- cUGGCCCGUugGcCCAucagaccgugaaucuCGUC-UGAGCg -3'
miRNA:   3'- aACCGGGCAugUaGGU---------------GCAGcACUCG- -5'
22375 5' -55.3 NC_005045.1 + 41519 0.71 0.336839
Target:  5'- -cGGCCU---CGUCCAUGUCGUGuagGGCg -3'
miRNA:   3'- aaCCGGGcauGUAGGUGCAGCAC---UCG- -5'
22375 5' -55.3 NC_005045.1 + 10656 0.76 0.155523
Target:  5'- cUGGCaagaaCGUGgG-CCGCGUCGUGGGCu -3'
miRNA:   3'- aACCGg----GCAUgUaGGUGCAGCACUCG- -5'
22375 5' -55.3 NC_005045.1 + 39680 1.1 0.000586
Target:  5'- cUUGGCCCGUACAUCCACGUCGUGAGCa -3'
miRNA:   3'- -AACCGGGCAUGUAGGUGCAGCACUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.