miRNA display CGI


Results 1 - 20 of 29 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22376 3' -56.3 NC_005045.1 + 40012 1.09 0.000511
Target:  5'- uCCUGCCAGCAGUACCCAGCGGACAAGc -3'
miRNA:   3'- -GGACGGUCGUCAUGGGUCGCCUGUUC- -5'
22376 3' -56.3 NC_005045.1 + 39631 0.66 0.5948
Target:  5'- cCCUGCCGGCGa----CGGCGGcgACGAGc -3'
miRNA:   3'- -GGACGGUCGUcauggGUCGCC--UGUUC- -5'
22376 3' -56.3 NC_005045.1 + 16876 0.66 0.572623
Target:  5'- aCUGCCAG-GGcGCCCcGCuGGACGAc -3'
miRNA:   3'- gGACGGUCgUCaUGGGuCG-CCUGUUc -5'
22376 3' -56.3 NC_005045.1 + 19570 0.66 0.550647
Target:  5'- aCCUGCucaggacucCAGCAcUACUCGGCuauucuccgGGACGAGa -3'
miRNA:   3'- -GGACG---------GUCGUcAUGGGUCG---------CCUGUUC- -5'
22376 3' -56.3 NC_005045.1 + 8640 0.68 0.455824
Target:  5'- gCUGgUGGCAGcGCCUccugauGCGGGCAAGa -3'
miRNA:   3'- gGACgGUCGUCaUGGGu-----CGCCUGUUC- -5'
22376 3' -56.3 NC_005045.1 + 11544 0.68 0.435938
Target:  5'- gCCggGUCuGguGUACCCAGCaGGcCGAGu -3'
miRNA:   3'- -GGa-CGGuCguCAUGGGUCG-CCuGUUC- -5'
22376 3' -56.3 NC_005045.1 + 6013 0.68 0.435938
Target:  5'- --aGCCucaAGCAGggcuugACCCGGCuGGugGAGg -3'
miRNA:   3'- ggaCGG---UCGUCa-----UGGGUCG-CCugUUC- -5'
22376 3' -56.3 NC_005045.1 + 13194 0.68 0.426185
Target:  5'- -aUGCCGGCAGgcGCCUucAGCGaGAUggGg -3'
miRNA:   3'- ggACGGUCGUCa-UGGG--UCGC-CUGuuC- -5'
22376 3' -56.3 NC_005045.1 + 14125 0.69 0.416562
Target:  5'- -gUGgCGGCGGUcgcaucuuCCCGGCGGGCAc- -3'
miRNA:   3'- ggACgGUCGUCAu-------GGGUCGCCUGUuc -5'
22376 3' -56.3 NC_005045.1 + 27461 0.71 0.292275
Target:  5'- gCCU-CCAGCggcuaccugguguuuGGUACCagcaCGGCGGACGAGa -3'
miRNA:   3'- -GGAcGGUCG---------------UCAUGG----GUCGCCUGUUC- -5'
22376 3' -56.3 NC_005045.1 + 5232 0.72 0.27485
Target:  5'- gCUGCCcuGGCcguGUGCCagCAGCGGGCAGa -3'
miRNA:   3'- gGACGG--UCGu--CAUGG--GUCGCCUGUUc -5'
22376 3' -56.3 NC_005045.1 + 27509 0.73 0.234937
Target:  5'- aUCUGCCAcCAGUACCUcuGGCaGGGCAAc -3'
miRNA:   3'- -GGACGGUcGUCAUGGG--UCG-CCUGUUc -5'
22376 3' -56.3 NC_005045.1 + 14827 0.87 0.02257
Target:  5'- aCCUGCCGGCAGUGCCCaacgucgcGGCGGAUg-- -3'
miRNA:   3'- -GGACGGUCGUCAUGGG--------UCGCCUGuuc -5'
22376 3' -56.3 NC_005045.1 + 24060 0.7 0.328057
Target:  5'- aCCUccGCuCGGUAuUGCUCAGCGGACAGa -3'
miRNA:   3'- -GGA--CG-GUCGUcAUGGGUCGCCUGUUc -5'
22376 3' -56.3 NC_005045.1 + 4123 0.71 0.312113
Target:  5'- gCCUGCCAGCAG-GCCgaggCAGCaGuACAGGc -3'
miRNA:   3'- -GGACGGUCGUCaUGG----GUCGcC-UGUUC- -5'
22376 3' -56.3 NC_005045.1 + 11003 0.71 0.296764
Target:  5'- aUCUGCCAGCAGg---CAGCGGAUc-- -3'
miRNA:   3'- -GGACGGUCGUCauggGUCGCCUGuuc -5'
22376 3' -56.3 NC_005045.1 + 7514 0.73 0.241235
Target:  5'- uCCUGacaggagUAGCAGUaugccACCCAGCGGuCAGGa -3'
miRNA:   3'- -GGACg------GUCGUCA-----UGGGUCGCCuGUUC- -5'
22376 3' -56.3 NC_005045.1 + 11239 0.73 0.211117
Target:  5'- -aUGCCAucCAGUACCCGGCGGGgAAu -3'
miRNA:   3'- ggACGGUc-GUCAUGGGUCGCCUgUUc -5'
22376 3' -56.3 NC_005045.1 + 37555 0.74 0.205496
Target:  5'- uCCUGCCGG-AGUcuCCCAGCGGAgGu- -3'
miRNA:   3'- -GGACGGUCgUCAu-GGGUCGCCUgUuc -5'
22376 3' -56.3 NC_005045.1 + 13247 0.66 0.5948
Target:  5'- gCCUGCCGGCaucuGGUcCUCGGCcuuguacauGACGAGg -3'
miRNA:   3'- -GGACGGUCG----UCAuGGGUCGc--------CUGUUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.