Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22377 | 3' | -66.2 | NC_005045.1 | + | 20264 | 0.66 | 0.191958 |
Target: 5'- uCCCaGGUGGCUGCUgUC-CaGGCCa- -3' miRNA: 3'- -GGGaCCGCCGACGGgAGcGgCCGGaa -5' |
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22377 | 3' | -66.2 | NC_005045.1 | + | 15006 | 0.66 | 0.191958 |
Target: 5'- cCCCggUGGCGGCucccgcUGCCgUCGaagucCCGGCUg- -3' miRNA: 3'- -GGG--ACCGCCG------ACGGgAGC-----GGCCGGaa -5' |
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22377 | 3' | -66.2 | NC_005045.1 | + | 477 | 0.66 | 0.191958 |
Target: 5'- uCCCUgGGUGGUccUGgCUUUGCCuGGCCa- -3' miRNA: 3'- -GGGA-CCGCCG--ACgGGAGCGG-CCGGaa -5' |
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22377 | 3' | -66.2 | NC_005045.1 | + | 16759 | 0.66 | 0.187073 |
Target: 5'- aCCCUGGCcgaccacGUUGCCCacggCGCCGGggaaCUUc -3' miRNA: 3'- -GGGACCGc------CGACGGGa---GCGGCCg---GAA- -5' |
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22377 | 3' | -66.2 | NC_005045.1 | + | 36391 | 0.66 | 0.17763 |
Target: 5'- aUCgUGGgGGUaugacguuucaUGCCCUCGCCGGg--- -3' miRNA: 3'- -GGgACCgCCG-----------ACGGGAGCGGCCggaa -5' |
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22377 | 3' | -66.2 | NC_005045.1 | + | 40904 | 0.66 | 0.17307 |
Target: 5'- gCCagGGCuuGGCaGCCCUCagugGCgCGGCCUUg -3' miRNA: 3'- gGGa-CCG--CCGaCGGGAG----CG-GCCGGAA- -5' |
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22377 | 3' | -66.2 | NC_005045.1 | + | 8453 | 0.66 | 0.168613 |
Target: 5'- aCCUGGCGuaUGagCUgCGCCGGCUg- -3' miRNA: 3'- gGGACCGCcgACggGA-GCGGCCGGaa -5' |
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22377 | 3' | -66.2 | NC_005045.1 | + | 32215 | 0.66 | 0.164261 |
Target: 5'- aUCgUGGCGGgUGCUCUuggCGCUGGCgUg -3' miRNA: 3'- -GGgACCGCCgACGGGA---GCGGCCGgAa -5' |
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22377 | 3' | -66.2 | NC_005045.1 | + | 36319 | 0.66 | 0.164261 |
Target: 5'- gUgUGGUGGCgucGCagaUUCGCCGGCCc- -3' miRNA: 3'- gGgACCGCCGa--CGg--GAGCGGCCGGaa -5' |
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22377 | 3' | -66.2 | NC_005045.1 | + | 84 | 0.67 | 0.160009 |
Target: 5'- gCCgGGUGGCgagggcuucccUGCCCUCGCUGcCCa- -3' miRNA: 3'- gGGaCCGCCG-----------ACGGGAGCGGCcGGaa -5' |
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22377 | 3' | -66.2 | NC_005045.1 | + | 42147 | 0.67 | 0.160009 |
Target: 5'- gCCgGGUGGCgagggcuucccUGCCCUCGCUGcCCa- -3' miRNA: 3'- gGGaCCGCCG-----------ACGGGAGCGGCcGGaa -5' |
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22377 | 3' | -66.2 | NC_005045.1 | + | 23123 | 0.67 | 0.147844 |
Target: 5'- cUCCUGcGCGGCcuggGCCUgCGC-GGCCUg -3' miRNA: 3'- -GGGAC-CGCCGa---CGGGaGCGgCCGGAa -5' |
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22377 | 3' | -66.2 | NC_005045.1 | + | 6810 | 0.67 | 0.147063 |
Target: 5'- aUCUGGCGcaagaagggaggcguGCUGgCCCUCGgugccuucgaccuguCCGGCCUg -3' miRNA: 3'- gGGACCGC---------------CGAC-GGGAGC---------------GGCCGGAa -5' |
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22377 | 3' | -66.2 | NC_005045.1 | + | 2648 | 0.67 | 0.140208 |
Target: 5'- aCCUGGCcGCUGCCCUgGCCa----- -3' miRNA: 3'- gGGACCGcCGACGGGAgCGGccggaa -5' |
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22377 | 3' | -66.2 | NC_005045.1 | + | 38063 | 0.67 | 0.140208 |
Target: 5'- gCCCaGGC-GCUGCCCUCugGCC-GCCg- -3' miRNA: 3'- -GGGaCCGcCGACGGGAG--CGGcCGGaa -5' |
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22377 | 3' | -66.2 | NC_005045.1 | + | 18686 | 0.69 | 0.113156 |
Target: 5'- aCCUGG-GGCgGCCCUgGCCGGa--- -3' miRNA: 3'- gGGACCgCCGaCGGGAgCGGCCggaa -5' |
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22377 | 3' | -66.2 | NC_005045.1 | + | 35496 | 0.69 | 0.113156 |
Target: 5'- gCCggUGGCGGCUGCgggguCgUCGCCGGUUa- -3' miRNA: 3'- gGG--ACCGCCGACG-----GgAGCGGCCGGaa -5' |
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22377 | 3' | -66.2 | NC_005045.1 | + | 5224 | 0.69 | 0.10433 |
Target: 5'- gUCUGGaaGCUGCCCUgGCCGuguGCCa- -3' miRNA: 3'- gGGACCgcCGACGGGAgCGGC---CGGaa -5' |
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22377 | 3' | -66.2 | NC_005045.1 | + | 34384 | 0.71 | 0.067258 |
Target: 5'- gCCCaGGUgGGCUGCCuCUCGCUGGUa-- -3' miRNA: 3'- -GGGaCCG-CCGACGG-GAGCGGCCGgaa -5' |
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22377 | 3' | -66.2 | NC_005045.1 | + | 26218 | 0.73 | 0.053695 |
Target: 5'- aCCgUGGCGGCccguagcUGCCUguaaUCGuuGGCCUUg -3' miRNA: 3'- -GGgACCGCCG-------ACGGG----AGCggCCGGAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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