miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22377 5' -53.3 NC_005045.1 + 39188 0.66 0.77806
Target:  5'- cGGGuAGGCcGUuguagaucgauucgcGGGACUGCgGCgUACCc -3'
miRNA:   3'- -CCU-UCCGuCA---------------CUCUGAUGgCGgAUGG- -5'
22377 5' -53.3 NC_005045.1 + 27520 0.66 0.731491
Target:  5'- --cAGGUAGccgcugGAGGCcGCCGCCUggauguacucaGCCg -3'
miRNA:   3'- ccuUCCGUCa-----CUCUGaUGGCGGA-----------UGG- -5'
22377 5' -53.3 NC_005045.1 + 14854 0.66 0.783176
Target:  5'- cGGAugcuGGCGc---GACUGCCGCCccugcugUACCg -3'
miRNA:   3'- -CCUu---CCGUcacuCUGAUGGCGG-------AUGG- -5'
22377 5' -53.3 NC_005045.1 + 41530 0.66 0.773939
Target:  5'- cGAGGGCGGcGcuaccccaccGGACccgcucACCGCCUACa -3'
miRNA:   3'- cCUUCCGUCaC----------UCUGa-----UGGCGGAUGg -5'
22377 5' -53.3 NC_005045.1 + 10242 0.66 0.770831
Target:  5'- uGGAAGGCaugcccuucAGUGAGGCgaccgggcguauggcCCGCaagACCc -3'
miRNA:   3'- -CCUUCCG---------UCACUCUGau-------------GGCGga-UGG- -5'
22377 5' -53.3 NC_005045.1 + 38440 0.66 0.742292
Target:  5'- uGGAGGGCuucaucgccGGUGAGACggACgaugagauggaaCGCCUguacACCc -3'
miRNA:   3'- -CCUUCCG---------UCACUCUGa-UG------------GCGGA----UGG- -5'
22377 5' -53.3 NC_005045.1 + 32621 0.67 0.698509
Target:  5'- uGGAGGGCc-UGGGGCagcgUACCGCgUuCCg -3'
miRNA:   3'- -CCUUCCGucACUCUG----AUGGCGgAuGG- -5'
22377 5' -53.3 NC_005045.1 + 21321 0.67 0.720585
Target:  5'- ---cGGUAGUGGaucGugUACCGgCUAUCg -3'
miRNA:   3'- ccuuCCGUCACU---CugAUGGCgGAUGG- -5'
22377 5' -53.3 NC_005045.1 + 15074 0.68 0.642333
Target:  5'- cGAcGGCAGcGGGA--GCCGCC-ACCg -3'
miRNA:   3'- cCUuCCGUCaCUCUgaUGGCGGaUGG- -5'
22377 5' -53.3 NC_005045.1 + 30908 0.68 0.619714
Target:  5'- cGAcGGCgAG-GAGGCUGCCGCUggUGCg -3'
miRNA:   3'- cCUuCCG-UCaCUCUGAUGGCGG--AUGg -5'
22377 5' -53.3 NC_005045.1 + 35351 0.68 0.619714
Target:  5'- aGGccGGCAGUGuAGccgaUGCCGUCgaugGCCa -3'
miRNA:   3'- -CCuuCCGUCAC-UCug--AUGGCGGa---UGG- -5'
22377 5' -53.3 NC_005045.1 + 32659 0.68 0.664912
Target:  5'- -cAGGGCGGcGAcACUGCCaGCuCUGCCu -3'
miRNA:   3'- ccUUCCGUCaCUcUGAUGG-CG-GAUGG- -5'
22377 5' -53.3 NC_005045.1 + 20203 0.69 0.597142
Target:  5'- uGGAcaGCAGccaccUGGGACUgACCGCCcugGCCu -3'
miRNA:   3'- -CCUucCGUC-----ACUCUGA-UGGCGGa--UGG- -5'
22377 5' -53.3 NC_005045.1 + 32731 0.71 0.456438
Target:  5'- aGGAAGGCAGagcugGcAGugUcGCCGCCcugcACCa -3'
miRNA:   3'- -CCUUCCGUCa----C-UCugA-UGGCGGa---UGG- -5'
22377 5' -53.3 NC_005045.1 + 9884 0.71 0.466688
Target:  5'- aGGAAGuCGGUGcAGGCU-CaCGUCUGCCg -3'
miRNA:   3'- -CCUUCcGUCAC-UCUGAuG-GCGGAUGG- -5'
22377 5' -53.3 NC_005045.1 + 28282 0.71 0.456439
Target:  5'- aGGAGGguGUGAuGGCUuuCUGgCUACCa -3'
miRNA:   3'- cCUUCCguCACU-CUGAu-GGCgGAUGG- -5'
22377 5' -53.3 NC_005045.1 + 40563 1.15 0.000457
Target:  5'- uGGAAGGCAGUGAGACUACCGCCUACCg -3'
miRNA:   3'- -CCUUCCGUCACUCUGAUGGCGGAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.