Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22377 | 5' | -53.3 | NC_005045.1 | + | 40563 | 1.15 | 0.000457 |
Target: 5'- uGGAAGGCAGUGAGACUACCGCCUACCg -3' miRNA: 3'- -CCUUCCGUCACUCUGAUGGCGGAUGG- -5' |
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22377 | 5' | -53.3 | NC_005045.1 | + | 32731 | 0.71 | 0.456438 |
Target: 5'- aGGAAGGCAGagcugGcAGugUcGCCGCCcugcACCa -3' miRNA: 3'- -CCUUCCGUCa----C-UCugA-UGGCGGa---UGG- -5' |
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22377 | 5' | -53.3 | NC_005045.1 | + | 28282 | 0.71 | 0.456439 |
Target: 5'- aGGAGGguGUGAuGGCUuuCUGgCUACCa -3' miRNA: 3'- cCUUCCguCACU-CUGAu-GGCgGAUGG- -5' |
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22377 | 5' | -53.3 | NC_005045.1 | + | 9884 | 0.71 | 0.466688 |
Target: 5'- aGGAAGuCGGUGcAGGCU-CaCGUCUGCCg -3' miRNA: 3'- -CCUUCcGUCAC-UCUGAuG-GCGGAUGG- -5' |
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22377 | 5' | -53.3 | NC_005045.1 | + | 20203 | 0.69 | 0.597142 |
Target: 5'- uGGAcaGCAGccaccUGGGACUgACCGCCcugGCCu -3' miRNA: 3'- -CCUucCGUC-----ACUCUGA-UGGCGGa--UGG- -5' |
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22377 | 5' | -53.3 | NC_005045.1 | + | 30908 | 0.68 | 0.619714 |
Target: 5'- cGAcGGCgAG-GAGGCUGCCGCUggUGCg -3' miRNA: 3'- cCUuCCG-UCaCUCUGAUGGCGG--AUGg -5' |
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22377 | 5' | -53.3 | NC_005045.1 | + | 35351 | 0.68 | 0.619714 |
Target: 5'- aGGccGGCAGUGuAGccgaUGCCGUCgaugGCCa -3' miRNA: 3'- -CCuuCCGUCAC-UCug--AUGGCGGa---UGG- -5' |
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22377 | 5' | -53.3 | NC_005045.1 | + | 15074 | 0.68 | 0.642333 |
Target: 5'- cGAcGGCAGcGGGA--GCCGCC-ACCg -3' miRNA: 3'- cCUuCCGUCaCUCUgaUGGCGGaUGG- -5' |
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22377 | 5' | -53.3 | NC_005045.1 | + | 32659 | 0.68 | 0.664912 |
Target: 5'- -cAGGGCGGcGAcACUGCCaGCuCUGCCu -3' miRNA: 3'- ccUUCCGUCaCUcUGAUGG-CG-GAUGG- -5' |
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22377 | 5' | -53.3 | NC_005045.1 | + | 32621 | 0.67 | 0.698509 |
Target: 5'- uGGAGGGCc-UGGGGCagcgUACCGCgUuCCg -3' miRNA: 3'- -CCUUCCGucACUCUG----AUGGCGgAuGG- -5' |
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22377 | 5' | -53.3 | NC_005045.1 | + | 21321 | 0.67 | 0.720585 |
Target: 5'- ---cGGUAGUGGaucGugUACCGgCUAUCg -3' miRNA: 3'- ccuuCCGUCACU---CugAUGGCgGAUGG- -5' |
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22377 | 5' | -53.3 | NC_005045.1 | + | 27520 | 0.66 | 0.731491 |
Target: 5'- --cAGGUAGccgcugGAGGCcGCCGCCUggauguacucaGCCg -3' miRNA: 3'- ccuUCCGUCa-----CUCUGaUGGCGGA-----------UGG- -5' |
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22377 | 5' | -53.3 | NC_005045.1 | + | 38440 | 0.66 | 0.742292 |
Target: 5'- uGGAGGGCuucaucgccGGUGAGACggACgaugagauggaaCGCCUguacACCc -3' miRNA: 3'- -CCUUCCG---------UCACUCUGa-UG------------GCGGA----UGG- -5' |
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22377 | 5' | -53.3 | NC_005045.1 | + | 10242 | 0.66 | 0.770831 |
Target: 5'- uGGAAGGCaugcccuucAGUGAGGCgaccgggcguauggcCCGCaagACCc -3' miRNA: 3'- -CCUUCCG---------UCACUCUGau-------------GGCGga-UGG- -5' |
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22377 | 5' | -53.3 | NC_005045.1 | + | 41530 | 0.66 | 0.773939 |
Target: 5'- cGAGGGCGGcGcuaccccaccGGACccgcucACCGCCUACa -3' miRNA: 3'- cCUUCCGUCaC----------UCUGa-----UGGCGGAUGg -5' |
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22377 | 5' | -53.3 | NC_005045.1 | + | 39188 | 0.66 | 0.77806 |
Target: 5'- cGGGuAGGCcGUuguagaucgauucgcGGGACUGCgGCgUACCc -3' miRNA: 3'- -CCU-UCCGuCA---------------CUCUGAUGgCGgAUGG- -5' |
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22377 | 5' | -53.3 | NC_005045.1 | + | 14854 | 0.66 | 0.783176 |
Target: 5'- cGGAugcuGGCGc---GACUGCCGCCccugcugUACCg -3' miRNA: 3'- -CCUu---CCGUcacuCUGAUGGCGG-------AUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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