Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22378 | 5' | -57.5 | NC_005045.1 | + | 26675 | 0.66 | 0.50649 |
Target: 5'- uGCUACGgCGGAccugccgGCcuUGCUGCCGGGa -3' miRNA: 3'- uCGGUGUgGCCU-------CGucACGAUGGUCU- -5' |
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22378 | 5' | -57.5 | NC_005045.1 | + | 18694 | 0.66 | 0.496994 |
Target: 5'- cGGcCCugGCCGGAGCGuGaUGCUggcGCCGc- -3' miRNA: 3'- -UC-GGugUGGCCUCGU-C-ACGA---UGGUcu -5' |
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22378 | 5' | -57.5 | NC_005045.1 | + | 22409 | 0.66 | 0.465948 |
Target: 5'- uGGCCGCgACC---GUAGUGCUcGCCAGGg -3' miRNA: 3'- -UCGGUG-UGGccuCGUCACGA-UGGUCU- -5' |
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22378 | 5' | -57.5 | NC_005045.1 | + | 4824 | 0.66 | 0.465948 |
Target: 5'- cAGCUugGCCaGGGCGGUGUgguggaagACCAc- -3' miRNA: 3'- -UCGGugUGGcCUCGUCACGa-------UGGUcu -5' |
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22378 | 5' | -57.5 | NC_005045.1 | + | 18474 | 0.67 | 0.435938 |
Target: 5'- uGGaCGCucuuCUGGAcGCGGUGCUGCCcGAa -3' miRNA: 3'- -UCgGUGu---GGCCU-CGUCACGAUGGuCU- -5' |
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22378 | 5' | -57.5 | NC_005045.1 | + | 41572 | 0.68 | 0.397721 |
Target: 5'- cGCCGC-CCaGGGCAGUGgCUGCUGcGAu -3' miRNA: 3'- uCGGUGuGGcCUCGUCAC-GAUGGU-CU- -5' |
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22378 | 5' | -57.5 | NC_005045.1 | + | 41717 | 0.68 | 0.397721 |
Target: 5'- cAGCC-CGCCGGuGCGGUGUacacgACCucgguGAu -3' miRNA: 3'- -UCGGuGUGGCCuCGUCACGa----UGGu----CU- -5' |
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22378 | 5' | -57.5 | NC_005045.1 | + | 18626 | 0.68 | 0.379437 |
Target: 5'- aAGCCGCACUGGAucaGCGG-GUcGCCAa- -3' miRNA: 3'- -UCGGUGUGGCCU---CGUCaCGaUGGUcu -5' |
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22378 | 5' | -57.5 | NC_005045.1 | + | 18283 | 0.68 | 0.379437 |
Target: 5'- cAGCaagUGCCGGAGCuugGCUGCCGGc -3' miRNA: 3'- -UCGgu-GUGGCCUCGucaCGAUGGUCu -5' |
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22378 | 5' | -57.5 | NC_005045.1 | + | 14945 | 0.68 | 0.361724 |
Target: 5'- cGCCGCcCCGGuGGUAGguaCUGCCGGGc -3' miRNA: 3'- uCGGUGuGGCC-UCGUCac-GAUGGUCU- -5' |
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22378 | 5' | -57.5 | NC_005045.1 | + | 8616 | 0.7 | 0.282008 |
Target: 5'- gGGCCuccACGCCGGGGCcucGGUGCUGgUGGc -3' miRNA: 3'- -UCGG---UGUGGCCUCG---UCACGAUgGUCu -5' |
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22378 | 5' | -57.5 | NC_005045.1 | + | 23350 | 0.7 | 0.281285 |
Target: 5'- cGCCGCacuaccaGCCGGuGGCGGUGcCUGCCGc- -3' miRNA: 3'- uCGGUG-------UGGCC-UCGUCAC-GAUGGUcu -5' |
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22378 | 5' | -57.5 | NC_005045.1 | + | 33610 | 0.71 | 0.241235 |
Target: 5'- aGGUCACGCgGGAGC--UGCUgcGCCGGGa -3' miRNA: 3'- -UCGGUGUGgCCUCGucACGA--UGGUCU- -5' |
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22378 | 5' | -57.5 | NC_005045.1 | + | 6771 | 0.72 | 0.222756 |
Target: 5'- aGGCUuucCCGGAGCGGgugguacuuccGCUGCCAGAg -3' miRNA: 3'- -UCGGuguGGCCUCGUCa----------CGAUGGUCU- -5' |
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22378 | 5' | -57.5 | NC_005045.1 | + | 23484 | 0.73 | 0.173953 |
Target: 5'- cAGCCGgcggagcUACCGGGGCcggcugagcgGGUGCUugCGGAa -3' miRNA: 3'- -UCGGU-------GUGGCCUCG----------UCACGAugGUCU- -5' |
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22378 | 5' | -57.5 | NC_005045.1 | + | 23318 | 0.73 | 0.165046 |
Target: 5'- gGGCUGgACCGGAGCc-UGCUGCUGGAu -3' miRNA: 3'- -UCGGUgUGGCCUCGucACGAUGGUCU- -5' |
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22378 | 5' | -57.5 | NC_005045.1 | + | 8567 | 0.75 | 0.12462 |
Target: 5'- gGGaCCACggaaucaaguuGCCGGGGCuGGUGCUGCCGGc -3' miRNA: 3'- -UC-GGUG-----------UGGCCUCG-UCACGAUGGUCu -5' |
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22378 | 5' | -57.5 | NC_005045.1 | + | 32820 | 0.77 | 0.088275 |
Target: 5'- uGCCuACACguccUGGAGCGGUGCUGCCGcGAa -3' miRNA: 3'- uCGG-UGUG----GCCUCGUCACGAUGGU-CU- -5' |
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22378 | 5' | -57.5 | NC_005045.1 | + | 40653 | 1.08 | 0.0004 |
Target: 5'- aAGCCACACCGGAGCAGUGCUACCAGAu -3' miRNA: 3'- -UCGGUGUGGCCUCGUCACGAUGGUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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