miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22378 5' -57.5 NC_005045.1 + 26675 0.66 0.50649
Target:  5'- uGCUACGgCGGAccugccgGCcuUGCUGCCGGGa -3'
miRNA:   3'- uCGGUGUgGCCU-------CGucACGAUGGUCU- -5'
22378 5' -57.5 NC_005045.1 + 18694 0.66 0.496994
Target:  5'- cGGcCCugGCCGGAGCGuGaUGCUggcGCCGc- -3'
miRNA:   3'- -UC-GGugUGGCCUCGU-C-ACGA---UGGUcu -5'
22378 5' -57.5 NC_005045.1 + 4824 0.66 0.465948
Target:  5'- cAGCUugGCCaGGGCGGUGUgguggaagACCAc- -3'
miRNA:   3'- -UCGGugUGGcCUCGUCACGa-------UGGUcu -5'
22378 5' -57.5 NC_005045.1 + 22409 0.66 0.465948
Target:  5'- uGGCCGCgACC---GUAGUGCUcGCCAGGg -3'
miRNA:   3'- -UCGGUG-UGGccuCGUCACGA-UGGUCU- -5'
22378 5' -57.5 NC_005045.1 + 18474 0.67 0.435938
Target:  5'- uGGaCGCucuuCUGGAcGCGGUGCUGCCcGAa -3'
miRNA:   3'- -UCgGUGu---GGCCU-CGUCACGAUGGuCU- -5'
22378 5' -57.5 NC_005045.1 + 41717 0.68 0.397721
Target:  5'- cAGCC-CGCCGGuGCGGUGUacacgACCucgguGAu -3'
miRNA:   3'- -UCGGuGUGGCCuCGUCACGa----UGGu----CU- -5'
22378 5' -57.5 NC_005045.1 + 41572 0.68 0.397721
Target:  5'- cGCCGC-CCaGGGCAGUGgCUGCUGcGAu -3'
miRNA:   3'- uCGGUGuGGcCUCGUCAC-GAUGGU-CU- -5'
22378 5' -57.5 NC_005045.1 + 18283 0.68 0.379437
Target:  5'- cAGCaagUGCCGGAGCuugGCUGCCGGc -3'
miRNA:   3'- -UCGgu-GUGGCCUCGucaCGAUGGUCu -5'
22378 5' -57.5 NC_005045.1 + 18626 0.68 0.379437
Target:  5'- aAGCCGCACUGGAucaGCGG-GUcGCCAa- -3'
miRNA:   3'- -UCGGUGUGGCCU---CGUCaCGaUGGUcu -5'
22378 5' -57.5 NC_005045.1 + 14945 0.68 0.361724
Target:  5'- cGCCGCcCCGGuGGUAGguaCUGCCGGGc -3'
miRNA:   3'- uCGGUGuGGCC-UCGUCac-GAUGGUCU- -5'
22378 5' -57.5 NC_005045.1 + 8616 0.7 0.282008
Target:  5'- gGGCCuccACGCCGGGGCcucGGUGCUGgUGGc -3'
miRNA:   3'- -UCGG---UGUGGCCUCG---UCACGAUgGUCu -5'
22378 5' -57.5 NC_005045.1 + 23350 0.7 0.281285
Target:  5'- cGCCGCacuaccaGCCGGuGGCGGUGcCUGCCGc- -3'
miRNA:   3'- uCGGUG-------UGGCC-UCGUCAC-GAUGGUcu -5'
22378 5' -57.5 NC_005045.1 + 33610 0.71 0.241235
Target:  5'- aGGUCACGCgGGAGC--UGCUgcGCCGGGa -3'
miRNA:   3'- -UCGGUGUGgCCUCGucACGA--UGGUCU- -5'
22378 5' -57.5 NC_005045.1 + 6771 0.72 0.222756
Target:  5'- aGGCUuucCCGGAGCGGgugguacuuccGCUGCCAGAg -3'
miRNA:   3'- -UCGGuguGGCCUCGUCa----------CGAUGGUCU- -5'
22378 5' -57.5 NC_005045.1 + 23484 0.73 0.173953
Target:  5'- cAGCCGgcggagcUACCGGGGCcggcugagcgGGUGCUugCGGAa -3'
miRNA:   3'- -UCGGU-------GUGGCCUCG----------UCACGAugGUCU- -5'
22378 5' -57.5 NC_005045.1 + 23318 0.73 0.165046
Target:  5'- gGGCUGgACCGGAGCc-UGCUGCUGGAu -3'
miRNA:   3'- -UCGGUgUGGCCUCGucACGAUGGUCU- -5'
22378 5' -57.5 NC_005045.1 + 8567 0.75 0.12462
Target:  5'- gGGaCCACggaaucaaguuGCCGGGGCuGGUGCUGCCGGc -3'
miRNA:   3'- -UC-GGUG-----------UGGCCUCG-UCACGAUGGUCu -5'
22378 5' -57.5 NC_005045.1 + 32820 0.77 0.088275
Target:  5'- uGCCuACACguccUGGAGCGGUGCUGCCGcGAa -3'
miRNA:   3'- uCGG-UGUG----GCCUCGUCACGAUGGU-CU- -5'
22378 5' -57.5 NC_005045.1 + 40653 1.08 0.0004
Target:  5'- aAGCCACACCGGAGCAGUGCUACCAGAu -3'
miRNA:   3'- -UCGGUGUGGCCUCGUCACGAUGGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.