miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22379 3' -55.3 NC_005045.1 + 30689 0.66 0.650063
Target:  5'- cGCgCCACUGAUccuaccgcgUGGCaCUACCGCCgAa -3'
miRNA:   3'- -UG-GGUGACUA---------ACUGgGAUGGUGGgUc -5'
22379 3' -55.3 NC_005045.1 + 14274 0.66 0.650063
Target:  5'- aACCCGCaGGccgGuaACCCgcaaaGCCGCCCGGa -3'
miRNA:   3'- -UGGGUGaCUaa-C--UGGGa----UGGUGGGUC- -5'
22379 3' -55.3 NC_005045.1 + 23817 0.66 0.638791
Target:  5'- aACCaaCACgcg--GACCCUGCCACCaAGg -3'
miRNA:   3'- -UGG--GUGacuaaCUGGGAUGGUGGgUC- -5'
22379 3' -55.3 NC_005045.1 + 16905 0.66 0.60498
Target:  5'- cACCUGCUGG-UGGCCCUGCacaagCugCUGGa -3'
miRNA:   3'- -UGGGUGACUaACUGGGAUG-----GugGGUC- -5'
22379 3' -55.3 NC_005045.1 + 24970 0.67 0.570274
Target:  5'- cGCCCugUuccucccGAgcaaGACCCUgaucACCGCCCAa -3'
miRNA:   3'- -UGGGugA-------CUaa--CUGGGA----UGGUGGGUc -5'
22379 3' -55.3 NC_005045.1 + 561 0.67 0.564717
Target:  5'- gGCCUAgaGGgagUGGCCaggcaaagccaggACCACCCAGg -3'
miRNA:   3'- -UGGGUgaCUa--ACUGGga-----------UGGUGGGUC- -5'
22379 3' -55.3 NC_005045.1 + 7839 0.67 0.560281
Target:  5'- uGCCCAUUGAUaauuCCUgggGCCAUCCAu -3'
miRNA:   3'- -UGGGUGACUAacu-GGGa--UGGUGGGUc -5'
22379 3' -55.3 NC_005045.1 + 32553 0.68 0.505817
Target:  5'- gACCCACgccgagGugCCUaaGCCGCuCCAGg -3'
miRNA:   3'- -UGGGUGacuaa-CugGGA--UGGUG-GGUC- -5'
22379 3' -55.3 NC_005045.1 + 21450 0.68 0.495187
Target:  5'- aACCaGCaGGUUGACCUcACCGCCgAGa -3'
miRNA:   3'- -UGGgUGaCUAACUGGGaUGGUGGgUC- -5'
22379 3' -55.3 NC_005045.1 + 39748 0.69 0.463935
Target:  5'- uGCUCACgacgugGAUguacgGGCCaagcgUGCCGCCCAGg -3'
miRNA:   3'- -UGGGUGa-----CUAa----CUGGg----AUGGUGGGUC- -5'
22379 3' -55.3 NC_005045.1 + 38855 0.69 0.453748
Target:  5'- gGCCCGCaUGggUGACCgUACCucggccaCCAGc -3'
miRNA:   3'- -UGGGUG-ACuaACUGGgAUGGug-----GGUC- -5'
22379 3' -55.3 NC_005045.1 + 25657 0.69 0.443683
Target:  5'- cACUCACgaGAUUGGaCCggacgagACCGCCCAGg -3'
miRNA:   3'- -UGGGUGa-CUAACUgGGa------UGGUGGGUC- -5'
22379 3' -55.3 NC_005045.1 + 33925 0.71 0.325411
Target:  5'- uGCCuCGCUGA-UGGCUCggcggGCCAgCCCAGg -3'
miRNA:   3'- -UGG-GUGACUaACUGGGa----UGGU-GGGUC- -5'
22379 3' -55.3 NC_005045.1 + 41260 1.09 0.000649
Target:  5'- cACCCACUGAUUGACCCUACCACCCAGg -3'
miRNA:   3'- -UGGGUGACUAACUGGGAUGGUGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.