Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22379 | 3' | -55.3 | NC_005045.1 | + | 14274 | 0.66 | 0.650063 |
Target: 5'- aACCCGCaGGccgGuaACCCgcaaaGCCGCCCGGa -3' miRNA: 3'- -UGGGUGaCUaa-C--UGGGa----UGGUGGGUC- -5' |
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22379 | 3' | -55.3 | NC_005045.1 | + | 30689 | 0.66 | 0.650063 |
Target: 5'- cGCgCCACUGAUccuaccgcgUGGCaCUACCGCCgAa -3' miRNA: 3'- -UG-GGUGACUA---------ACUGgGAUGGUGGgUc -5' |
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22379 | 3' | -55.3 | NC_005045.1 | + | 23817 | 0.66 | 0.638791 |
Target: 5'- aACCaaCACgcg--GACCCUGCCACCaAGg -3' miRNA: 3'- -UGG--GUGacuaaCUGGGAUGGUGGgUC- -5' |
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22379 | 3' | -55.3 | NC_005045.1 | + | 16905 | 0.66 | 0.60498 |
Target: 5'- cACCUGCUGG-UGGCCCUGCacaagCugCUGGa -3' miRNA: 3'- -UGGGUGACUaACUGGGAUG-----GugGGUC- -5' |
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22379 | 3' | -55.3 | NC_005045.1 | + | 24970 | 0.67 | 0.570274 |
Target: 5'- cGCCCugUuccucccGAgcaaGACCCUgaucACCGCCCAa -3' miRNA: 3'- -UGGGugA-------CUaa--CUGGGA----UGGUGGGUc -5' |
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22379 | 3' | -55.3 | NC_005045.1 | + | 561 | 0.67 | 0.564717 |
Target: 5'- gGCCUAgaGGgagUGGCCaggcaaagccaggACCACCCAGg -3' miRNA: 3'- -UGGGUgaCUa--ACUGGga-----------UGGUGGGUC- -5' |
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22379 | 3' | -55.3 | NC_005045.1 | + | 7839 | 0.67 | 0.560281 |
Target: 5'- uGCCCAUUGAUaauuCCUgggGCCAUCCAu -3' miRNA: 3'- -UGGGUGACUAacu-GGGa--UGGUGGGUc -5' |
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22379 | 3' | -55.3 | NC_005045.1 | + | 32553 | 0.68 | 0.505817 |
Target: 5'- gACCCACgccgagGugCCUaaGCCGCuCCAGg -3' miRNA: 3'- -UGGGUGacuaa-CugGGA--UGGUG-GGUC- -5' |
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22379 | 3' | -55.3 | NC_005045.1 | + | 21450 | 0.68 | 0.495187 |
Target: 5'- aACCaGCaGGUUGACCUcACCGCCgAGa -3' miRNA: 3'- -UGGgUGaCUAACUGGGaUGGUGGgUC- -5' |
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22379 | 3' | -55.3 | NC_005045.1 | + | 39748 | 0.69 | 0.463935 |
Target: 5'- uGCUCACgacgugGAUguacgGGCCaagcgUGCCGCCCAGg -3' miRNA: 3'- -UGGGUGa-----CUAa----CUGGg----AUGGUGGGUC- -5' |
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22379 | 3' | -55.3 | NC_005045.1 | + | 38855 | 0.69 | 0.453748 |
Target: 5'- gGCCCGCaUGggUGACCgUACCucggccaCCAGc -3' miRNA: 3'- -UGGGUG-ACuaACUGGgAUGGug-----GGUC- -5' |
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22379 | 3' | -55.3 | NC_005045.1 | + | 25657 | 0.69 | 0.443683 |
Target: 5'- cACUCACgaGAUUGGaCCggacgagACCGCCCAGg -3' miRNA: 3'- -UGGGUGa-CUAACUgGGa------UGGUGGGUC- -5' |
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22379 | 3' | -55.3 | NC_005045.1 | + | 33925 | 0.71 | 0.325411 |
Target: 5'- uGCCuCGCUGA-UGGCUCggcggGCCAgCCCAGg -3' miRNA: 3'- -UGG-GUGACUaACUGGGa----UGGU-GGGUC- -5' |
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22379 | 3' | -55.3 | NC_005045.1 | + | 41260 | 1.09 | 0.000649 |
Target: 5'- cACCCACUGAUUGACCCUACCACCCAGg -3' miRNA: 3'- -UGGGUGACUAACUGGGAUGGUGGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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