Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2238 | 3' | -58.5 | NC_001405.1 | + | 23214 | 0.66 | 0.436703 |
Target: 5'- cUCGCCUucgaucuCAGCgCAGcGGUGcAGCCacaacGCGCa -3' miRNA: 3'- -AGUGGGu------GUCG-GUC-CCAC-UUGG-----CGCG- -5' |
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2238 | 3' | -58.5 | NC_001405.1 | + | 12048 | 0.66 | 0.436703 |
Target: 5'- aCGCUCACGGCCuu-GUGGA-UGCGCu -3' miRNA: 3'- aGUGGGUGUCGGuccCACUUgGCGCG- -5' |
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2238 | 3' | -58.5 | NC_001405.1 | + | 16297 | 0.66 | 0.426999 |
Target: 5'- cCGCCCGuCGGCC--GGUGcGACgUGCGCg -3' miRNA: 3'- aGUGGGU-GUCGGucCCAC-UUG-GCGCG- -5' |
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2238 | 3' | -58.5 | NC_001405.1 | + | 13790 | 0.66 | 0.426999 |
Target: 5'- cUCGCCCAgCAGgCGcGGGcGggUgGUGCg -3' miRNA: 3'- -AGUGGGU-GUCgGU-CCCaCuuGgCGCG- -5' |
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2238 | 3' | -58.5 | NC_001405.1 | + | 24495 | 0.66 | 0.417424 |
Target: 5'- aCAUCCGCuauGGCgAGGGgcacaucGCUGCGCu -3' miRNA: 3'- aGUGGGUG---UCGgUCCCacu----UGGCGCG- -5' |
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2238 | 3' | -58.5 | NC_001405.1 | + | 11992 | 0.66 | 0.407981 |
Target: 5'- gCAUCCACaaGGCCGuGaGcGUGAGCCggcgGCGCg -3' miRNA: 3'- aGUGGGUG--UCGGU-C-C-CACUUGG----CGCG- -5' |
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2238 | 3' | -58.5 | NC_001405.1 | + | 17821 | 0.66 | 0.398673 |
Target: 5'- gCGCgCCGCcGCCGGuGGUGcGCaCGaCGCa -3' miRNA: 3'- aGUG-GGUGuCGGUC-CCACuUG-GC-GCG- -5' |
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2238 | 3' | -58.5 | NC_001405.1 | + | 18545 | 0.66 | 0.394988 |
Target: 5'- aCACCCagcagaaaccuguGCuGCCAGGGccguccgccguUGuuguaacccgcccuAGCCGCGCg -3' miRNA: 3'- aGUGGG-------------UGuCGGUCCC-----------AC--------------UUGGCGCG- -5' |
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2238 | 3' | -58.5 | NC_001405.1 | + | 23992 | 0.67 | 0.389501 |
Target: 5'- gUCGCgCCGCAccgcguccgcGCUcgGGGGUGGuuUCGCGCu -3' miRNA: 3'- -AGUG-GGUGU----------CGG--UCCCACUu-GGCGCG- -5' |
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2238 | 3' | -58.5 | NC_001405.1 | + | 16331 | 0.67 | 0.389501 |
Target: 5'- aUACCCGCGGCCAGccuucGAGCgGCccGCa -3' miRNA: 3'- aGUGGGUGUCGGUCcca--CUUGgCG--CG- -5' |
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2238 | 3' | -58.5 | NC_001405.1 | + | 8612 | 0.67 | 0.38047 |
Target: 5'- -gACCCGCcgggagaggGGgCAGGGgcacgucgGcGCCGCGCg -3' miRNA: 3'- agUGGGUG---------UCgGUCCCa-------CuUGGCGCG- -5' |
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2238 | 3' | -58.5 | NC_001405.1 | + | 3707 | 0.67 | 0.371579 |
Target: 5'- gCACCC-CGGCCcauGGGG-GcAugCGCGUu -3' miRNA: 3'- aGUGGGuGUCGG---UCCCaC-UugGCGCG- -5' |
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2238 | 3' | -58.5 | NC_001405.1 | + | 9065 | 0.68 | 0.329287 |
Target: 5'- gCGCCCGCGauGCCgaaggGGGcGUGGucuacaGCCGCGUc -3' miRNA: 3'- aGUGGGUGU--CGG-----UCC-CACU------UGGCGCG- -5' |
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2238 | 3' | -58.5 | NC_001405.1 | + | 6675 | 0.68 | 0.305667 |
Target: 5'- aC-CCCAUGGCaUGGGGUGggUgaGCGCg -3' miRNA: 3'- aGuGGGUGUCG-GUCCCACuuGg-CGCG- -5' |
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2238 | 3' | -58.5 | NC_001405.1 | + | 12151 | 0.68 | 0.298088 |
Target: 5'- gCGCCCuggagGCAGCUGGGGccGGACCuGgGCu -3' miRNA: 3'- aGUGGG-----UGUCGGUCCCa-CUUGG-CgCG- -5' |
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2238 | 3' | -58.5 | NC_001405.1 | + | 12119 | 0.69 | 0.269231 |
Target: 5'- -uGCCCGugcCAGCCAGGGcccuuUGcaGGCUGUGCa -3' miRNA: 3'- agUGGGU---GUCGGUCCC-----AC--UUGGCGCG- -5' |
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2238 | 3' | -58.5 | NC_001405.1 | + | 14884 | 0.7 | 0.251708 |
Target: 5'- uUCACCCACAGCCGccugagcaacuuguuGGGcau-CCGCaaGCg -3' miRNA: 3'- -AGUGGGUGUCGGU---------------CCCacuuGGCG--CG- -5' |
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2238 | 3' | -58.5 | NC_001405.1 | + | 11859 | 0.71 | 0.206951 |
Target: 5'- cCACCUuguCAGCCAGGcucaAGCUGCGCu -3' miRNA: 3'- aGUGGGu--GUCGGUCCcac-UUGGCGCG- -5' |
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2238 | 3' | -58.5 | NC_001405.1 | + | 6158 | 0.71 | 0.196096 |
Target: 5'- -gGCCCGCGgugauGCCuuugAGGGUG-GCCGCGUc -3' miRNA: 3'- agUGGGUGU-----CGG----UCCCACuUGGCGCG- -5' |
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2238 | 3' | -58.5 | NC_001405.1 | + | 7308 | 0.71 | 0.196096 |
Target: 5'- cUCACCCACAccucGCUccGGaaGGCCGCGCa -3' miRNA: 3'- -AGUGGGUGU----CGGucCCacUUGGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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