Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22380 | 5' | -62.8 | NC_005045.1 | + | 41586 | 1.04 | 0.000281 |
Target: 5'- aCACCCUGCCCGUGGACGGCGGUGGUUc -3' miRNA: 3'- -GUGGGACGGGCACCUGCCGCCACCAA- -5' |
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22380 | 5' | -62.8 | NC_005045.1 | + | 39019 | 0.7 | 0.147773 |
Target: 5'- aGCCCgguaGCCC-UGGAgGGCGGcGGUg -3' miRNA: 3'- gUGGGa---CGGGcACCUgCCGCCaCCAa -5' |
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22380 | 5' | -62.8 | NC_005045.1 | + | 10149 | 0.69 | 0.173506 |
Target: 5'- -uCCCUGCCC-UGGACGGCcuGGaGGa- -3' miRNA: 3'- guGGGACGGGcACCUGCCG--CCaCCaa -5' |
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22380 | 5' | -62.8 | NC_005045.1 | + | 27427 | 0.68 | 0.187818 |
Target: 5'- ---gCUGUCCGUGGACGGCGacgGGg- -3' miRNA: 3'- guggGACGGGCACCUGCCGCca-CCaa -5' |
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22380 | 5' | -62.8 | NC_005045.1 | + | 41512 | 0.68 | 0.203159 |
Target: 5'- aGCCaCUGCCC-UGGGCGGCGaG-GGc- -3' miRNA: 3'- gUGG-GACGGGcACCUGCCGC-CaCCaa -5' |
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22380 | 5' | -62.8 | NC_005045.1 | + | 9607 | 0.67 | 0.237113 |
Target: 5'- gACCCgcgcuucGUCCG-GGACGGUGGcUGGa- -3' miRNA: 3'- gUGGGa------CGGGCaCCUGCCGCC-ACCaa -5' |
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22380 | 5' | -62.8 | NC_005045.1 | + | 4751 | 0.66 | 0.275692 |
Target: 5'- aGCUUggcGCCCGgGGuagcaGCGGUGGUGGUUu -3' miRNA: 3'- gUGGGa--CGGGCaCC-----UGCCGCCACCAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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