Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2239 | 3' | -56.8 | NC_001405.1 | + | 8527 | 0.66 | 0.534908 |
Target: 5'- cGGGCGGUgggCC-GCGGGgGUGuCCUu- -3' miRNA: 3'- cCCCGCUAa--GGaCGUCCgCAU-GGAcg -5' |
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2239 | 3' | -56.8 | NC_001405.1 | + | 17258 | 0.68 | 0.411882 |
Target: 5'- cGGuGGCaGAUgCCgcggUGCAGGCGgcCgCUGCg -3' miRNA: 3'- -CC-CCG-CUAaGG----ACGUCCGCauG-GACG- -5' |
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2239 | 3' | -56.8 | NC_001405.1 | + | 27499 | 0.7 | 0.2853 |
Target: 5'- aGGGGCGcagCUUGCGGGCG-GCUuucgucacagggUGCg -3' miRNA: 3'- -CCCCGCuaaGGACGUCCGCaUGG------------ACG- -5' |
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2239 | 3' | -56.8 | NC_001405.1 | + | 12086 | 0.71 | 0.257181 |
Target: 5'- -cGGCGAUagagaggccgagUCCUacuuugacGCGGGCGcugACCUGCg -3' miRNA: 3'- ccCCGCUA------------AGGA--------CGUCCGCa--UGGACG- -5' |
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2239 | 3' | -56.8 | NC_001405.1 | + | 8377 | 0.74 | 0.153388 |
Target: 5'- -aGGCGGgagcUCCUGCAGGUuUACCUcGCa -3' miRNA: 3'- ccCCGCUa---AGGACGUCCGcAUGGA-CG- -5' |
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2239 | 3' | -56.8 | NC_001405.1 | + | 11924 | 0.75 | 0.137036 |
Target: 5'- aGGGGUauGGUauaUCUUGCGGGCGUaaaACUUGCc -3' miRNA: 3'- -CCCCG--CUA---AGGACGUCCGCA---UGGACG- -5' |
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2239 | 3' | -56.8 | NC_001405.1 | + | 23361 | 1.14 | 0.000174 |
Target: 5'- uGGGGCGAUUCCUGCAGGCGUACCUGCa -3' miRNA: 3'- -CCCCGCUAAGGACGUCCGCAUGGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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