miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22394 5' -52.8 NC_005056.1 + 2091 0.66 0.725479
Target:  5'- gUGGAAaucGACGUCAGUcauaacGCCcuuGCCGGa -3'
miRNA:   3'- gACCUUauaCUGCAGUCG------CGG---UGGCU- -5'
22394 5' -52.8 NC_005056.1 + 10637 0.66 0.714219
Target:  5'- -cGGGcgGUGAUG-CuggccuGUGCCGCCGGu -3'
miRNA:   3'- gaCCUuaUACUGCaGu-----CGCGGUGGCU- -5'
22394 5' -52.8 NC_005056.1 + 10988 0.66 0.70287
Target:  5'- aUGGugag-GACGUCAG-GCCggugGCCGAc -3'
miRNA:   3'- gACCuuauaCUGCAGUCgCGG----UGGCU- -5'
22394 5' -52.8 NC_005056.1 + 1404 0.67 0.668411
Target:  5'- gCUGG----UGAUGUCGGUGgCGCUGAc -3'
miRNA:   3'- -GACCuuauACUGCAGUCGCgGUGGCU- -5'
22394 5' -52.8 NC_005056.1 + 7084 0.67 0.621989
Target:  5'- -cGGGGcUAUGACGUgAuaGUCACCGGa -3'
miRNA:   3'- gaCCUU-AUACUGCAgUcgCGGUGGCU- -5'
22394 5' -52.8 NC_005056.1 + 18567 0.69 0.508027
Target:  5'- -cGGAAcUAUGGCcucaGUgGGCGCUGCCGGu -3'
miRNA:   3'- gaCCUU-AUACUG----CAgUCGCGGUGGCU- -5'
22394 5' -52.8 NC_005056.1 + 19710 0.7 0.486191
Target:  5'- aUGGcaccgAUGACGcCAgucagcgccaguGCGCCACCGAc -3'
miRNA:   3'- gACCuua--UACUGCaGU------------CGCGGUGGCU- -5'
22394 5' -52.8 NC_005056.1 + 4909 0.71 0.433691
Target:  5'- uCUGGcugaugAUGACGUCAGCgGCCAgCa- -3'
miRNA:   3'- -GACCuua---UACUGCAGUCG-CGGUgGcu -5'
22394 5' -52.8 NC_005056.1 + 4378 0.71 0.394149
Target:  5'- -cGGc---UGACGcUCGGUGCCACCGGc -3'
miRNA:   3'- gaCCuuauACUGC-AGUCGCGGUGGCU- -5'
22394 5' -52.8 NC_005056.1 + 2117 0.72 0.339396
Target:  5'- -gGGGAc---GCGcCAGCGCCGCCGAa -3'
miRNA:   3'- gaCCUUauacUGCaGUCGCGGUGGCU- -5'
22394 5' -52.8 NC_005056.1 + 1472 1.09 0.000963
Target:  5'- uCUGGAAUAUGACGUCAGCGCCACCGAc -3'
miRNA:   3'- -GACCUUAUACUGCAGUCGCGGUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.