miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22397 5' -58 NC_005056.1 + 16889 0.66 0.451691
Target:  5'- cGCUgaaCCAGCAgGUCG--CAUCCACGa -3'
miRNA:   3'- aCGA---GGUCGUgCGGCaaGUGGGUGCc -5'
22397 5' -58 NC_005056.1 + 1369 0.66 0.431906
Target:  5'- aGCgaggaagCCAGcCACGCCGaccUCGCCUggGCGa -3'
miRNA:   3'- aCGa------GGUC-GUGCGGCa--AGUGGG--UGCc -5'
22397 5' -58 NC_005056.1 + 21282 0.66 0.422205
Target:  5'- --aUCCGGCGCGCCccgguGUUCaACCUcaucaACGGu -3'
miRNA:   3'- acgAGGUCGUGCGG-----CAAG-UGGG-----UGCC- -5'
22397 5' -58 NC_005056.1 + 15883 0.66 0.412637
Target:  5'- aGCaCCuGCACGCCGUgaugauagUCACUCAUc- -3'
miRNA:   3'- aCGaGGuCGUGCGGCA--------AGUGGGUGcc -5'
22397 5' -58 NC_005056.1 + 17819 0.66 0.403203
Target:  5'- cUGCUCgguCAGCAuuggUGCCG-UCAUgCGCGGc -3'
miRNA:   3'- -ACGAG---GUCGU----GCGGCaAGUGgGUGCC- -5'
22397 5' -58 NC_005056.1 + 5697 0.68 0.308893
Target:  5'- aUGCcgCCGGUGCGCUGgcUCACCUGCa- -3'
miRNA:   3'- -ACGa-GGUCGUGCGGCa-AGUGGGUGcc -5'
22397 5' -58 NC_005056.1 + 9670 0.69 0.271932
Target:  5'- gGCcagaaUCAGCAC-CUGUUCcCCCACGGa -3'
miRNA:   3'- aCGa----GGUCGUGcGGCAAGuGGGUGCC- -5'
22397 5' -58 NC_005056.1 + 10135 0.7 0.226266
Target:  5'- gGCgauaUCCugcGCACGCCGgUCGgCUCACGGg -3'
miRNA:   3'- aCG----AGGu--CGUGCGGCaAGU-GGGUGCC- -5'
22397 5' -58 NC_005056.1 + 1582 0.71 0.203202
Target:  5'- gUGUUCCAGCucguGCGCuCGUUCuauCCCGCc- -3'
miRNA:   3'- -ACGAGGUCG----UGCG-GCAAGu--GGGUGcc -5'
22397 5' -58 NC_005056.1 + 17548 0.81 0.041405
Target:  5'- uUGCUCCAGCcggucgACGCCGUUCACCUucucaaucauguugAUGGu -3'
miRNA:   3'- -ACGAGGUCG------UGCGGCAAGUGGG--------------UGCC- -5'
22397 5' -58 NC_005056.1 + 5409 1.09 0.000274
Target:  5'- cUGCUCCAGCACGCCGUUCACCCACGGc -3'
miRNA:   3'- -ACGAGGUCGUGCGGCAAGUGGGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.