miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
224 5' -60.2 AC_000008.1 + 17778 0.66 0.371085
Target:  5'- cGGCGGCgCGCGUCG-CACCGucGCa- -3'
miRNA:   3'- cUUGCCG-GCGCGGCaGUGGCucUGgu -5'
224 5' -60.2 AC_000008.1 + 27278 0.66 0.371085
Target:  5'- cAACGGaauCCGCGCC--CACCGAaACCGa -3'
miRNA:   3'- cUUGCC---GGCGCGGcaGUGGCUcUGGU- -5'
224 5' -60.2 AC_000008.1 + 33970 0.66 0.36247
Target:  5'- -uACGGagUGCGCCGagacaACCGAGAUCGu -3'
miRNA:   3'- cuUGCCg-GCGCGGCag---UGGCUCUGGU- -5'
224 5' -60.2 AC_000008.1 + 30250 0.66 0.361616
Target:  5'- cGAACGGCCagagcucaccugGCucguggaaugcgaGaCCGUCugCGGGGCCu -3'
miRNA:   3'- -CUUGCCGG------------CG-------------C-GGCAGugGCUCUGGu -5'
224 5' -60.2 AC_000008.1 + 10363 0.66 0.353995
Target:  5'- aGAGgGGCCaGCGUaggGUgGCCGGGGCUc -3'
miRNA:   3'- -CUUgCCGG-CGCGg--CAgUGGCUCUGGu -5'
224 5' -60.2 AC_000008.1 + 18104 0.67 0.306122
Target:  5'- cGACGGUgcgacgCGCGCCGcCGCCGguGGugCGc -3'
miRNA:   3'- cUUGCCG------GCGCGGCaGUGGC--UCugGU- -5'
224 5' -60.2 AC_000008.1 + 19632 0.67 0.298643
Target:  5'- -cAUGGCCGC-CCGUCgGCCG-GugCGa -3'
miRNA:   3'- cuUGCCGGCGcGGCAG-UGGCuCugGU- -5'
224 5' -60.2 AC_000008.1 + 1091 0.67 0.291306
Target:  5'- gGAAgUGGCCGCGCUGgu-CCGugcAGACCu -3'
miRNA:   3'- -CUU-GCCGGCGCGGCaguGGC---UCUGGu -5'
224 5' -60.2 AC_000008.1 + 18140 0.68 0.277056
Target:  5'- cGACGcauGCCGC-CCGUCagGCCGuGGCCGg -3'
miRNA:   3'- cUUGC---CGGCGcGGCAG--UGGCuCUGGU- -5'
224 5' -60.2 AC_000008.1 + 23541 0.68 0.256733
Target:  5'- cGGACGGCUggcucugcaGCGCCGcccgcacCGCCGGGuCCGu -3'
miRNA:   3'- -CUUGCCGG---------CGCGGCa------GUGGCUCuGGU- -5'
224 5' -60.2 AC_000008.1 + 532 0.68 0.250235
Target:  5'- --cCGaGCCGCuCCGaCACCGGGACUg -3'
miRNA:   3'- cuuGC-CGGCGcGGCaGUGGCUCUGGu -5'
224 5' -60.2 AC_000008.1 + 18073 0.7 0.187434
Target:  5'- uGAGCGGUgGCGCCuUCAgCUGGGGCUc -3'
miRNA:   3'- -CUUGCCGgCGCGGcAGU-GGCUCUGGu -5'
224 5' -60.2 AC_000008.1 + 8278 0.71 0.172426
Target:  5'- aGGACGGCCgGCGCCGccgaucugaaaugUCccguccggACgGAGACCAa -3'
miRNA:   3'- -CUUGCCGG-CGCGGC-------------AG--------UGgCUCUGGU- -5'
224 5' -60.2 AC_000008.1 + 16330 0.71 0.163766
Target:  5'- cGAGCGGCCGcCGCagcaGCCGcGGCCAu -3'
miRNA:   3'- -CUUGCCGGC-GCGgcagUGGCuCUGGU- -5'
224 5' -60.2 AC_000008.1 + 17865 0.72 0.138935
Target:  5'- uGAACGGgCGCgaGCCGUguCgCGGGGCCAg -3'
miRNA:   3'- -CUUGCCgGCG--CGGCAguG-GCUCUGGU- -5'
224 5' -60.2 AC_000008.1 + 22928 0.72 0.131457
Target:  5'- -cACGGUCGCGCgGUCGCCuguGGGAgCCGc -3'
miRNA:   3'- cuUGCCGGCGCGgCAGUGG---CUCU-GGU- -5'
224 5' -60.2 AC_000008.1 + 17508 0.75 0.081446
Target:  5'- gGAACccGCCGcCGCCGUCGCCGucGCCAg -3'
miRNA:   3'- -CUUGc-CGGC-GCGGCAGUGGCucUGGU- -5'
224 5' -60.2 AC_000008.1 + 19562 0.75 0.076924
Target:  5'- cGGCGGCCGC-UCGUCGCCuGGACCu -3'
miRNA:   3'- cUUGCCGGCGcGGCAGUGGcUCUGGu -5'
224 5' -60.2 AC_000008.1 + 26384 1.08 0.000248
Target:  5'- aGAACGGCCGCGCCGUCACCGAGACCAu -3'
miRNA:   3'- -CUUGCCGGCGCGGCAGUGGCUCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.