miRNA display CGI


Results 21 - 40 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2240 5' -65.9 NC_001405.1 + 12081 0.68 0.110216
Target:  5'- aGCuCGCGguCGCUgAGCUCGCGccGCCGg -3'
miRNA:   3'- aCG-GCGCguGUGGgUCGGGCGC--CGGU- -5'
2240 5' -65.9 NC_001405.1 + 16330 0.68 0.119637
Target:  5'- gGCCGC-CGCAgC-AG-CCGCGGCCAu -3'
miRNA:   3'- aCGGCGcGUGUgGgUCgGGCGCCGGU- -5'
2240 5' -65.9 NC_001405.1 + 17758 0.68 0.110216
Target:  5'- cGUCGUGCGCACCa--CCgGCGGCg- -3'
miRNA:   3'- aCGGCGCGUGUGGgucGGgCGCCGgu -5'
2240 5' -65.9 NC_001405.1 + 16184 0.68 0.106939
Target:  5'- cGCCGCcgacccgGCACugCC-GCCCaacgcgcggcgGCGGCCc -3'
miRNA:   3'- aCGGCG-------CGUGugGGuCGGG-----------CGCCGGu -5'
2240 5' -65.9 NC_001405.1 + 21684 0.68 0.113277
Target:  5'- -cCUGCGCACGCCCuucucGGCCgGCaacGCCAc -3'
miRNA:   3'- acGGCGCGUGUGGG-----UCGGgCGc--CGGU- -5'
2240 5' -65.9 NC_001405.1 + 17204 0.67 0.126329
Target:  5'- gGUC-UGCACGCCCAGuCCCG-GuGCCAc -3'
miRNA:   3'- aCGGcGCGUGUGGGUC-GGGCgC-CGGU- -5'
2240 5' -65.9 NC_001405.1 + 16450 0.67 0.122941
Target:  5'- gGCCGCuaaccgagucGCGCACCCAGUacaCGuuGCCc -3'
miRNA:   3'- aCGGCG----------CGUGUGGGUCGg--GCgcCGGu -5'
2240 5' -65.9 NC_001405.1 + 8715 0.67 0.129803
Target:  5'- -uCCGCGCGCAgcaccagcUCCuGCCCGCGcGCg- -3'
miRNA:   3'- acGGCGCGUGU--------GGGuCGGGCGC-CGgu -5'
2240 5' -65.9 NC_001405.1 + 8563 0.67 0.129803
Target:  5'- cGCCGCGCgguaccguagucGCGCCgCGGggaUGCGGCCu -3'
miRNA:   3'- aCGGCGCG------------UGUGG-GUCgg-GCGCCGGu -5'
2240 5' -65.9 NC_001405.1 + 17330 0.67 0.133365
Target:  5'- gGCCGCaGCGgcCGCCU-GCaCCGCGGCa- -3'
miRNA:   3'- aCGGCG-CGU--GUGGGuCG-GGCGCCGgu -5'
2240 5' -65.9 NC_001405.1 + 21639 0.67 0.133365
Target:  5'- gGuCCGUGUGCACCagccGCaCCGCGGCg- -3'
miRNA:   3'- aC-GGCGCGUGUGGgu--CG-GGCGCCGgu -5'
2240 5' -65.9 NC_001405.1 + 16421 0.67 0.133365
Target:  5'- gUGcCCGUGCGCACCCGcccCCCGCGcaaCUAg -3'
miRNA:   3'- -AC-GGCGCGUGUGGGUc--GGGCGCc--GGU- -5'
2240 5' -65.9 NC_001405.1 + 17838 0.67 0.129803
Target:  5'- cGCCGCgGCgauugGCGCCguGCCCggaauugcauccGUGGCCu -3'
miRNA:   3'- aCGGCG-CG-----UGUGGguCGGG------------CGCCGGu -5'
2240 5' -65.9 NC_001405.1 + 26857 0.66 0.16924
Target:  5'- cGCUGCGUcugGCGCCCAacgaacccguaucGaCCCGCGaGCUu -3'
miRNA:   3'- aCGGCGCG---UGUGGGU-------------C-GGGCGC-CGGu -5'
2240 5' -65.9 NC_001405.1 + 3794 0.66 0.169688
Target:  5'- aGCCGC-UGCAgCCAccGCCCGCGGg-- -3'
miRNA:   3'- aCGGCGcGUGUgGGU--CGGGCGCCggu -5'
2240 5' -65.9 NC_001405.1 + 15975 0.66 0.169688
Target:  5'- -aCCGCGCGC-CCUggGGCgcgcacaaaCGCGGCCGc -3'
miRNA:   3'- acGGCGCGUGuGGG--UCGg--------GCGCCGGU- -5'
2240 5' -65.9 NC_001405.1 + 11544 0.66 0.174231
Target:  5'- cGUaCGCGguUACCaGGUCgGCGGCCGc -3'
miRNA:   3'- aCG-GCGCguGUGGgUCGGgCGCCGGU- -5'
2240 5' -65.9 NC_001405.1 + 6446 0.66 0.165252
Target:  5'- uUGgCGCGUGCACCUgguGCCCGaCGaGCgCAc -3'
miRNA:   3'- -ACgGCGCGUGUGGGu--CGGGC-GC-CG-GU- -5'
2240 5' -65.9 NC_001405.1 + 6625 0.66 0.15669
Target:  5'- -uUCGaCGCGCGCCUgcuGCCCGgGGUCu -3'
miRNA:   3'- acGGC-GCGUGUGGGu--CGGGCgCCGGu -5'
2240 5' -65.9 NC_001405.1 + 6389 0.66 0.152561
Target:  5'- cGuuGCGCGCGaauacgUgCAGCUaaacauCGCGGCCAa -3'
miRNA:   3'- aCggCGCGUGU------GgGUCGG------GCGCCGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.