Results 41 - 46 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
2240 | 5' | -65.9 | NC_001405.1 | + | 15975 | 0.66 | 0.169688 |
Target: 5'- -aCCGCGCGC-CCUggGGCgcgcacaaaCGCGGCCGc -3' miRNA: 3'- acGGCGCGUGuGGG--UCGg--------GCGCCGGU- -5' |
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2240 | 5' | -65.9 | NC_001405.1 | + | 11544 | 0.66 | 0.174231 |
Target: 5'- cGUaCGCGguUACCaGGUCgGCGGCCGc -3' miRNA: 3'- aCG-GCGCguGUGGgUCGGgCGCCGGU- -5' |
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2240 | 5' | -65.9 | NC_001405.1 | + | 23234 | 0.66 | 0.156273 |
Target: 5'- aGCgGUGCagccacaACGCgCAGCCCGUGGgCu -3' miRNA: 3'- aCGgCGCG-------UGUGgGUCGGGCGCCgGu -5' |
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2240 | 5' | -65.9 | NC_001405.1 | + | 6625 | 0.66 | 0.15669 |
Target: 5'- -uUCGaCGCGCGCCUgcuGCCCGgGGUCu -3' miRNA: 3'- acGGC-GCGUGUGGGu--CGGGCgCCGGu -5' |
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2240 | 5' | -65.9 | NC_001405.1 | + | 24629 | 0.66 | 0.160919 |
Target: 5'- cUGCCGUGCcaACCgCAGCCgaGCGGaCAa -3' miRNA: 3'- -ACGGCGCGugUGG-GUCGGg-CGCCgGU- -5' |
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2240 | 5' | -65.9 | NC_001405.1 | + | 5398 | 0.66 | 0.15669 |
Target: 5'- cUGCCG-GUcuuCGCCCuGCgCGuCGGCCAg -3' miRNA: 3'- -ACGGCgCGu--GUGGGuCGgGC-GCCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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