Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2240 | 5' | -65.9 | NC_001405.1 | + | 21684 | 0.68 | 0.113277 |
Target: 5'- -cCUGCGCACGCCCuucucGGCCgGCaacGCCAc -3' miRNA: 3'- acGGCGCGUGUGGG-----UCGGgCGc--CGGU- -5' |
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2240 | 5' | -65.9 | NC_001405.1 | + | 16330 | 0.68 | 0.119637 |
Target: 5'- gGCCGC-CGCAgC-AG-CCGCGGCCAu -3' miRNA: 3'- aCGGCGcGUGUgGgUCgGGCGCCGGU- -5' |
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2240 | 5' | -65.9 | NC_001405.1 | + | 16254 | 0.68 | 0.110216 |
Target: 5'- cGCCGCGCGuugggcggcagUGCCgGGUCgGCGGCg- -3' miRNA: 3'- aCGGCGCGU-----------GUGGgUCGGgCGCCGgu -5' |
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2240 | 5' | -65.9 | NC_001405.1 | + | 12081 | 0.68 | 0.110216 |
Target: 5'- aGCuCGCGguCGCUgAGCUCGCGccGCCGg -3' miRNA: 3'- aCG-GCGCguGUGGgUCGGGCGC--CGGU- -5' |
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2240 | 5' | -65.9 | NC_001405.1 | + | 17815 | 0.68 | 0.105191 |
Target: 5'- cGCCGCcggugguGCGCACgacgcaugccgcccgUCAGgCCGUGGCCGg -3' miRNA: 3'- aCGGCG-------CGUGUG---------------GGUCgGGCGCCGGU- -5' |
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2240 | 5' | -65.9 | NC_001405.1 | + | 16172 | 0.69 | 0.098734 |
Target: 5'- cGCCGggcucCGCGCACCaCGGUCUGaauGGCCGc -3' miRNA: 3'- aCGGC-----GCGUGUGG-GUCGGGCg--CCGGU- -5' |
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2240 | 5' | -65.9 | NC_001405.1 | + | 10856 | 0.69 | 0.090873 |
Target: 5'- cGCCGCGCGCGgCCAGU----GGCCAa -3' miRNA: 3'- aCGGCGCGUGUgGGUCGggcgCCGGU- -5' |
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2240 | 5' | -65.9 | NC_001405.1 | + | 11513 | 0.69 | 0.088388 |
Target: 5'- gUGUgCGCGCGCGggacuaauCCCGGUCCGCGcGUCGg -3' miRNA: 3'- -ACG-GCGCGUGU--------GGGUCGGGCGC-CGGU- -5' |
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2240 | 5' | -65.9 | NC_001405.1 | + | 18958 | 0.7 | 0.081313 |
Target: 5'- gUGgCGCGgGCAaacugcaCCAGCCCGgGGCuCAg -3' miRNA: 3'- -ACgGCGCgUGUg------GGUCGGGCgCCG-GU- -5' |
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2240 | 5' | -65.9 | NC_001405.1 | + | 16308 | 0.7 | 0.079078 |
Target: 5'- gGCC-CGCAUGgCC-GCCCGuCGGCCGg -3' miRNA: 3'- aCGGcGCGUGUgGGuCGGGC-GCCGGU- -5' |
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2240 | 5' | -65.9 | NC_001405.1 | + | 13204 | 0.68 | 0.116416 |
Target: 5'- cUGcCCGUGUccuccuGC-CCCAGCgCGCGGCUg -3' miRNA: 3'- -AC-GGCGCG------UGuGGGUCGgGCGCCGGu -5' |
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2240 | 5' | -65.9 | NC_001405.1 | + | 16450 | 0.67 | 0.122941 |
Target: 5'- gGCCGCuaaccgagucGCGCACCCAGUacaCGuuGCCc -3' miRNA: 3'- aCGGCG----------CGUGUGGGUCGg--GCgcCGGu -5' |
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2240 | 5' | -65.9 | NC_001405.1 | + | 23899 | 1.07 | 0.000066 |
Target: 5'- gUGCCGCGCACACCCAGCCCGCGGCCAu -3' miRNA: 3'- -ACGGCGCGUGUGGGUCGGGCGCCGGU- -5' |
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2240 | 5' | -65.9 | NC_001405.1 | + | 6446 | 0.66 | 0.165252 |
Target: 5'- uUGgCGCGUGCACCUgguGCCCGaCGaGCgCAc -3' miRNA: 3'- -ACgGCGCGUGUGGGu--CGGGC-GC-CG-GU- -5' |
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2240 | 5' | -65.9 | NC_001405.1 | + | 6625 | 0.66 | 0.15669 |
Target: 5'- -uUCGaCGCGCGCCUgcuGCCCGgGGUCu -3' miRNA: 3'- acGGC-GCGUGUGGGu--CGGGCgCCGGu -5' |
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2240 | 5' | -65.9 | NC_001405.1 | + | 6389 | 0.66 | 0.152561 |
Target: 5'- cGuuGCGCGCGaauacgUgCAGCUaaacauCGCGGCCAa -3' miRNA: 3'- aCggCGCGUGU------GgGUCGG------GCGCCGGU- -5' |
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2240 | 5' | -65.9 | NC_001405.1 | + | 17330 | 0.67 | 0.133365 |
Target: 5'- gGCCGCaGCGgcCGCCU-GCaCCGCGGCa- -3' miRNA: 3'- aCGGCG-CGU--GUGGGuCG-GGCGCCGgu -5' |
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2240 | 5' | -65.9 | NC_001405.1 | + | 8563 | 0.67 | 0.129803 |
Target: 5'- cGCCGCGCgguaccguagucGCGCCgCGGggaUGCGGCCu -3' miRNA: 3'- aCGGCGCG------------UGUGG-GUCgg-GCGCCGGu -5' |
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2240 | 5' | -65.9 | NC_001405.1 | + | 8715 | 0.67 | 0.129803 |
Target: 5'- -uCCGCGCGCAgcaccagcUCCuGCCCGCGcGCg- -3' miRNA: 3'- acGGCGCGUGU--------GGGuCGGGCGC-CGgu -5' |
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2240 | 5' | -65.9 | NC_001405.1 | + | 17204 | 0.67 | 0.126329 |
Target: 5'- gGUC-UGCACGCCCAGuCCCG-GuGCCAc -3' miRNA: 3'- aCGGcGCGUGUGGGUC-GGGCgC-CGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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