miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22401 3' -55.4 NC_005056.1 + 5855 0.66 0.530268
Target:  5'- -aCACCG-GCAaaACGUGgaCGCCCGAa-- -3'
miRNA:   3'- ugGUGGCuCGU--UGUAC--GCGGGCUauu -5'
22401 3' -55.4 NC_005056.1 + 5698 0.66 0.501432
Target:  5'- uGCCGCCGGugcgcuggcucaccuGCAACGUGCgacacaGCUCGAc-- -3'
miRNA:   3'- -UGGUGGCU---------------CGUUGUACG------CGGGCUauu -5'
22401 3' -55.4 NC_005056.1 + 18459 0.66 0.486192
Target:  5'- aACCACCGcgcagcuuaaccGGCAGCGUGaCGCgCUGGc-- -3'
miRNA:   3'- -UGGUGGC------------UCGUUGUAC-GCG-GGCUauu -5'
22401 3' -55.4 NC_005056.1 + 6517 0.66 0.47224
Target:  5'- cGCUACaGGGCGACAcgcucgacgccauuUGUGUCCGGUAu -3'
miRNA:   3'- -UGGUGgCUCGUUGU--------------ACGCGGGCUAUu -5'
22401 3' -55.4 NC_005056.1 + 26478 0.68 0.413629
Target:  5'- -gCACCGGGCuuuuauUGCGCCgGAUGu -3'
miRNA:   3'- ugGUGGCUCGuugu--ACGCGGgCUAUu -5'
22401 3' -55.4 NC_005056.1 + 8842 0.68 0.394149
Target:  5'- cGCCGCCgGAGCcgguCAccCGCCCGGUGGa -3'
miRNA:   3'- -UGGUGG-CUCGuu--GUacGCGGGCUAUU- -5'
22401 3' -55.4 NC_005056.1 + 24657 0.68 0.366068
Target:  5'- aACaGCC-AGCAGCuAUGCGCCgGAUAAu -3'
miRNA:   3'- -UGgUGGcUCGUUG-UACGCGGgCUAUU- -5'
22401 3' -55.4 NC_005056.1 + 9341 0.68 0.366068
Target:  5'- cACCgguaaaGCCGAGCAGaggacGCGCCgGAUAAu -3'
miRNA:   3'- -UGG------UGGCUCGUUgua--CGCGGgCUAUU- -5'
22401 3' -55.4 NC_005056.1 + 9519 0.7 0.314163
Target:  5'- cGCUGCCGugugcagaccGGCGGCAUGUGCaCCGAc-- -3'
miRNA:   3'- -UGGUGGC----------UCGUUGUACGCG-GGCUauu -5'
22401 3' -55.4 NC_005056.1 + 1771 0.71 0.247079
Target:  5'- -aCACCGuGGCGACA-GCGCCgGAUGc -3'
miRNA:   3'- ugGUGGC-UCGUUGUaCGCGGgCUAUu -5'
22401 3' -55.4 NC_005056.1 + 8832 0.71 0.240405
Target:  5'- cUCACUGAcCAGCGUGCGCUCGGUc- -3'
miRNA:   3'- uGGUGGCUcGUUGUACGCGGGCUAuu -5'
22401 3' -55.4 NC_005056.1 + 3977 0.76 0.113919
Target:  5'- aGCCACCGgcGGUGGCGUGaCGCCCuGAUGAc -3'
miRNA:   3'- -UGGUGGC--UCGUUGUAC-GCGGG-CUAUU- -5'
22401 3' -55.4 NC_005056.1 + 6871 1.06 0.000659
Target:  5'- aACCACCGAGCAACAUGCGCCCGAUAAa -3'
miRNA:   3'- -UGGUGGCUCGUUGUACGCGGGCUAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.