miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22401 5' -54.8 NC_005056.1 + 16793 0.66 0.571017
Target:  5'- cGGUGAUGGGcUUguCCACCGcccaCAuguGCGc -3'
miRNA:   3'- -CCACUACCC-AAguGGUGGCc---GUu--CGU- -5'
22401 5' -54.8 NC_005056.1 + 10024 0.75 0.177035
Target:  5'- -uUGAUGaGaGUUCACCGCCGGUAuGCGc -3'
miRNA:   3'- ccACUAC-C-CAAGUGGUGGCCGUuCGU- -5'
22401 5' -54.8 NC_005056.1 + 9910 0.72 0.244856
Target:  5'- gGGUGAcacGGGUugacgcuuucaccgUgACCACCGGCAccguGGCAg -3'
miRNA:   3'- -CCACUa--CCCA--------------AgUGGUGGCCGU----UCGU- -5'
22401 5' -54.8 NC_005056.1 + 6835 1.1 0.00044
Target:  5'- gGGUGAUGGGUUCACCACCGGCAAGCAc -3'
miRNA:   3'- -CCACUACCCAAGUGGUGGCCGUUCGU- -5'
22401 5' -54.8 NC_005056.1 + 6036 0.75 0.176535
Target:  5'- cGGUGA-GGGUacgguggUCAUCccgcaACCGGCAGGCGa -3'
miRNA:   3'- -CCACUaCCCA-------AGUGG-----UGGCCGUUCGU- -5'
22401 5' -54.8 NC_005056.1 + 4944 0.66 0.593805
Target:  5'- -----cGGGacgcgUACCGCCGGCAGGUu -3'
miRNA:   3'- ccacuaCCCaa---GUGGUGGCCGUUCGu -5'
22401 5' -54.8 NC_005056.1 + 3528 0.73 0.221341
Target:  5'- -cUGGUGGGgcuggccgUCACCGaugacCCGGCAAGCc -3'
miRNA:   3'- ccACUACCCa-------AGUGGU-----GGCCGUUCGu -5'
22401 5' -54.8 NC_005056.1 + 142 0.66 0.548447
Target:  5'- gGGUGugaugacgGGGUguaaaaaaGCCGCCcGCAGGCGg -3'
miRNA:   3'- -CCACua------CCCAag------UGGUGGcCGUUCGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.