miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22402 3' -52.6 NC_005056.1 + 7463 0.77 0.18692
Target:  5'- cUCACgCUGAccgUAACCGGC---ACCCGGCa -3'
miRNA:   3'- -AGUG-GACU---AUUGGCCGcuaUGGGUCG- -5'
22402 3' -52.6 NC_005056.1 + 5575 0.69 0.538137
Target:  5'- cCACCUccucGGUGAacauguaCGGCGGggugcggcgguguuUACCCGGCa -3'
miRNA:   3'- aGUGGA----CUAUUg------GCCGCU--------------AUGGGUCG- -5'
22402 3' -52.6 NC_005056.1 + 20429 0.69 0.552854
Target:  5'- gCAuCCUG-UAACUGGCGGUcaagcugugucCCCGGCg -3'
miRNA:   3'- aGU-GGACuAUUGGCCGCUAu----------GGGUCG- -5'
22402 3' -52.6 NC_005056.1 + 19759 0.67 0.633609
Target:  5'- cCGCgaUGAUGgcauugauGCCGGUGAUAaCCGGCc -3'
miRNA:   3'- aGUGg-ACUAU--------UGGCCGCUAUgGGUCG- -5'
22402 3' -52.6 NC_005056.1 + 18331 0.67 0.645227
Target:  5'- uUCGCCUGAgcACgGGUcgGAcGCUCGGUg -3'
miRNA:   3'- -AGUGGACUauUGgCCG--CUaUGGGUCG- -5'
22402 3' -52.6 NC_005056.1 + 8080 0.66 0.725479
Target:  5'- gUCugCUGuucACUGGCGAcguuguucacccUGUCCAGCg -3'
miRNA:   3'- -AGugGACuauUGGCCGCU------------AUGGGUCG- -5'
22402 3' -52.6 NC_005056.1 + 2128 0.66 0.736635
Target:  5'- ---aCUGuuUAACCGGgGAcGCgCCAGCg -3'
miRNA:   3'- agugGACu-AUUGGCCgCUaUG-GGUCG- -5'
22402 3' -52.6 NC_005056.1 + 9659 0.65 0.745477
Target:  5'- gCACCUGuucccccaCGGaCGGUGCCCAccauguGCg -3'
miRNA:   3'- aGUGGACuauug---GCC-GCUAUGGGU------CG- -5'
22402 3' -52.6 NC_005056.1 + 18906 0.65 0.745477
Target:  5'- uUCGCCaGugccauauucagcGUGACCGGCGuUGCCgccugaauagccgCAGCa -3'
miRNA:   3'- -AGUGGaC-------------UAUUGGCCGCuAUGG-------------GUCG- -5'
22402 3' -52.6 NC_005056.1 + 6977 1.14 0.000451
Target:  5'- aUCACCUGAUAACCGGCGAUACCCAGCa -3'
miRNA:   3'- -AGUGGACUAUUGGCCGCUAUGGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.