miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22402 5' -58.8 NC_005056.1 + 5507 0.66 0.355617
Target:  5'- -cGCCGCACcCCGCcguacauguucaccgAGGaGGUGGCGc -3'
miRNA:   3'- uaCGGCGUGuGGCG---------------UCCgUCACUGUc -5'
22402 5' -58.8 NC_005056.1 + 166 0.66 0.3435
Target:  5'- -aGCCGC---CCGCAGGCGGcGAUg- -3'
miRNA:   3'- uaCGGCGuguGGCGUCCGUCaCUGuc -5'
22402 5' -58.8 NC_005056.1 + 5767 0.66 0.335029
Target:  5'- uGUGUCGCACGuuGCAGGUgagccagcgcccGGcGGCAu -3'
miRNA:   3'- -UACGGCGUGUggCGUCCG------------UCaCUGUc -5'
22402 5' -58.8 NC_005056.1 + 27781 0.66 0.318548
Target:  5'- cUGCaCGCGcCGCCGCAGaCAGUGGu-- -3'
miRNA:   3'- uACG-GCGU-GUGGCGUCcGUCACUguc -5'
22402 5' -58.8 NC_005056.1 + 16499 0.66 0.318548
Target:  5'- -aGCgCGCAgACCcagcgcaCGGGCGGUGGCAu -3'
miRNA:   3'- uaCG-GCGUgUGGc------GUCCGUCACUGUc -5'
22402 5' -58.8 NC_005056.1 + 3966 0.67 0.302684
Target:  5'- -cGCCGCAgCAaaGCcaccGGCGGUGGCGu -3'
miRNA:   3'- uaCGGCGU-GUggCGu---CCGUCACUGUc -5'
22402 5' -58.8 NC_005056.1 + 1550 0.68 0.258764
Target:  5'- -cGCCG-ACACCG-AGGCcGGUGGCAu -3'
miRNA:   3'- uaCGGCgUGUGGCgUCCG-UCACUGUc -5'
22402 5' -58.8 NC_005056.1 + 7942 0.69 0.220189
Target:  5'- uGUGuuGU-UAUCGCuGGCGGUGGCGGg -3'
miRNA:   3'- -UACggCGuGUGGCGuCCGUCACUGUC- -5'
22402 5' -58.8 NC_005056.1 + 9623 0.69 0.197283
Target:  5'- gGUGCUGauuCugGCCGUGGGCGGUGAa-- -3'
miRNA:   3'- -UACGGC---GugUGGCGUCCGUCACUguc -5'
22402 5' -58.8 NC_005056.1 + 18720 0.7 0.176484
Target:  5'- -gGCCGCACuCCGCaagcAGGCgcgccagcucGGUGACAa -3'
miRNA:   3'- uaCGGCGUGuGGCG----UCCG----------UCACUGUc -5'
22402 5' -58.8 NC_005056.1 + 6942 1.07 0.000229
Target:  5'- gAUGCCGCACACCGCAGGCAGUGACAGg -3'
miRNA:   3'- -UACGGCGUGUGGCGUCCGUCACUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.