miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22403 3' -56.3 NC_005056.1 + 2960 0.66 0.481248
Target:  5'- uGGCAGGGGuuuuccgUGCCgCAGAUugccgccauGUUGCaGAUg -3'
miRNA:   3'- gCCGUCCCU-------GCGG-GUCUA---------UAACG-CUG- -5'
22403 3' -56.3 NC_005056.1 + 2029 0.67 0.408453
Target:  5'- gCGGCAGauugucaccauugaGGACGCCCuGAaag-GUGGCu -3'
miRNA:   3'- -GCCGUC--------------CCUGCGGGuCUauaaCGCUG- -5'
22403 3' -56.3 NC_005056.1 + 667 0.7 0.26862
Target:  5'- aGGCAGaguuaaGGGCGCUgAGAUAUUcCGGCa -3'
miRNA:   3'- gCCGUC------CCUGCGGgUCUAUAAcGCUG- -5'
22403 3' -56.3 NC_005056.1 + 3358 0.7 0.275789
Target:  5'- aGGCA-GGAUGCCgcgCAGAUGUuccagguuaaUGCGGCa -3'
miRNA:   3'- gCCGUcCCUGCGG---GUCUAUA----------ACGCUG- -5'
22403 3' -56.3 NC_005056.1 + 7440 1.1 0.000292
Target:  5'- cCGGCAGGGACGCCCAGAUAUUGCGACa -3'
miRNA:   3'- -GCCGUCCCUGCGGGUCUAUAACGCUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.