miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22403 5' -61.1 NC_005056.1 + 1586 0.67 0.246127
Target:  5'- -cGGCGUGUUCcagcucGUGCGcucguucuaUCCCGCCgCGc -3'
miRNA:   3'- uaCCGCGCGAGu-----UACGC---------AGGGCGG-GC- -5'
22403 5' -61.1 NC_005056.1 + 9105 0.69 0.155635
Target:  5'- cGUGGCGCGU--AggGUGUgCCGUCCGg -3'
miRNA:   3'- -UACCGCGCGagUuaCGCAgGGCGGGC- -5'
22403 5' -61.1 NC_005056.1 + 21238 0.7 0.13885
Target:  5'- -gGGCGCGCcgGAUGUGgucaccaUCCgCGCCCGg -3'
miRNA:   3'- uaCCGCGCGagUUACGC-------AGG-GCGGGC- -5'
22403 5' -61.1 NC_005056.1 + 7406 1.07 0.000169
Target:  5'- aAUGGCGCGCUCAAUGCGUCCCGCCCGg -3'
miRNA:   3'- -UACCGCGCGAGUUACGCAGGGCGGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.