miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22404 5' -52 NC_005056.1 + 4577 0.79 0.141436
Target:  5'- gGCGGUcgGCUGGCUGCAGAAauaccGCAAUGAa -3'
miRNA:   3'- -UGCCG--UGGCCGACGUUUU-----UGUUGCUg -5'
22404 5' -52 NC_005056.1 + 20725 0.66 0.730189
Target:  5'- gAUGGCACCGGCaUGauuu----ACGGCa -3'
miRNA:   3'- -UGCCGUGGCCG-ACguuuuuguUGCUG- -5'
22404 5' -52 NC_005056.1 + 26250 0.66 0.72678
Target:  5'- -aGGCACCGGUaaggcguuuaccggUGCuuauGCAugGAa -3'
miRNA:   3'- ugCCGUGGCCG--------------ACGuuuuUGUugCUg -5'
22404 5' -52 NC_005056.1 + 12758 0.67 0.67234
Target:  5'- cUGGCGgCGGC-GCu-GGGCAAUGACc -3'
miRNA:   3'- uGCCGUgGCCGaCGuuUUUGUUGCUG- -5'
22404 5' -52 NC_005056.1 + 8243 0.67 0.660585
Target:  5'- cUGuGCGCCGGUUGCAccAGCGccCGGCc -3'
miRNA:   3'- uGC-CGUGGCCGACGUuuUUGUu-GCUG- -5'
22404 5' -52 NC_005056.1 + 17493 0.67 0.648799
Target:  5'- aACGGCgucgACCGGCUG---GAGCAACa-- -3'
miRNA:   3'- -UGCCG----UGGCCGACguuUUUGUUGcug -5'
22404 5' -52 NC_005056.1 + 17989 0.67 0.636996
Target:  5'- -aGGCGcuCCGGCgaaGCGGAAACA-CGAa -3'
miRNA:   3'- ugCCGU--GGCCGa--CGUUUUUGUuGCUg -5'
22404 5' -52 NC_005056.1 + 27632 0.68 0.601604
Target:  5'- cACuGCAgCGGCUGUuaccGCAugGGCg -3'
miRNA:   3'- -UGcCGUgGCCGACGuuuuUGUugCUG- -5'
22404 5' -52 NC_005056.1 + 20222 0.68 0.57814
Target:  5'- uAUGGCACCGGUgGUuauauucCGGCGACc -3'
miRNA:   3'- -UGCCGUGGCCGaCGuuuuu--GUUGCUG- -5'
22404 5' -52 NC_005056.1 + 11144 0.69 0.520544
Target:  5'- cACaGCACCGGCUGgG---GC-GCGACa -3'
miRNA:   3'- -UGcCGUGGCCGACgUuuuUGuUGCUG- -5'
22404 5' -52 NC_005056.1 + 19033 0.78 0.150073
Target:  5'- uCGGC-CCGGUUGCGAAGACGGCa-- -3'
miRNA:   3'- uGCCGuGGCCGACGUUUUUGUUGcug -5'
22404 5' -52 NC_005056.1 + 12844 0.74 0.280703
Target:  5'- gACGGCGCUGGCgggGCuugcuACuGCGGCa -3'
miRNA:   3'- -UGCCGUGGCCGa--CGuuuu-UGuUGCUG- -5'
22404 5' -52 NC_005056.1 + 20287 0.74 0.296246
Target:  5'- cACGGCACCGGCUggccGCucuuAUGugGACc -3'
miRNA:   3'- -UGCCGUGGCCGA----CGuuuuUGUugCUG- -5'
22404 5' -52 NC_005056.1 + 16081 0.73 0.320801
Target:  5'- gACGGCACCGGCgaaGaCGAAGA-AACGAa -3'
miRNA:   3'- -UGCCGUGGCCGa--C-GUUUUUgUUGCUg -5'
22404 5' -52 NC_005056.1 + 18601 0.7 0.454648
Target:  5'- -gGGaUugCGGCgGCGGGAACGAUGGCc -3'
miRNA:   3'- ugCC-GugGCCGaCGUUUUUGUUGCUG- -5'
22404 5' -52 NC_005056.1 + 7749 0.7 0.476137
Target:  5'- cCGGUGCCguGGC-GCAGAcgGGCGGCGGCu -3'
miRNA:   3'- uGCCGUGG--CCGaCGUUU--UUGUUGCUG- -5'
22404 5' -52 NC_005056.1 + 7790 1.1 0.000764
Target:  5'- cACGGCACCGGCUGCAAAAACAACGACg -3'
miRNA:   3'- -UGCCGUGGCCGACGUUUUUGUUGCUG- -5'
22404 5' -52 NC_005056.1 + 22262 0.66 0.695706
Target:  5'- uGCGGCauGCUGGCauaAAGGACAAUGAa -3'
miRNA:   3'- -UGCCG--UGGCCGacgUUUUUGUUGCUg -5'
22404 5' -52 NC_005056.1 + 14415 0.67 0.648799
Target:  5'- uGCGGCAuuuCCGGCcauucaggauuUGCAGGAuccAC-ACGGCu -3'
miRNA:   3'- -UGCCGU---GGCCG-----------ACGUUUU---UGuUGCUG- -5'
22404 5' -52 NC_005056.1 + 7453 0.68 0.625188
Target:  5'- cCGuaACCGGCacccgGCAGGGACGcccagauauuGCGACa -3'
miRNA:   3'- uGCcgUGGCCGa----CGUUUUUGU----------UGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.