miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22405 3' -47.2 NC_005056.1 + 9270 0.74 0.549806
Target:  5'- --aUUGAUUAUCcgGCGCGUCCUCugCu -3'
miRNA:   3'- agaAGUUAGUAGa-CGUGUAGGAGugG- -5'
22405 3' -47.2 NC_005056.1 + 9139 0.72 0.706414
Target:  5'- ---cCAGUCGUUuuuUGCAUAUCCgCGCCa -3'
miRNA:   3'- agaaGUUAGUAG---ACGUGUAGGaGUGG- -5'
22405 3' -47.2 NC_005056.1 + 7277 0.68 0.906625
Target:  5'- aUUUCAGUCcgUUGuCACAggacagaCUCGCCa -3'
miRNA:   3'- aGAAGUUAGuaGAC-GUGUag-----GAGUGG- -5'
22405 3' -47.2 NC_005056.1 + 11056 0.66 0.944439
Target:  5'- gUCacgCGGUCGgccaccggcCUG-ACGUCCUCACCa -3'
miRNA:   3'- -AGaa-GUUAGUa--------GACgUGUAGGAGUGG- -5'
22405 3' -47.2 NC_005056.1 + 3854 0.66 0.944439
Target:  5'- --cUCAGUUuuucCUGCACAUgCUCAgCg -3'
miRNA:   3'- agaAGUUAGua--GACGUGUAgGAGUgG- -5'
22405 3' -47.2 NC_005056.1 + 14345 0.68 0.874812
Target:  5'- aCUcCAGUCG--UGCACGUuCCUCAUCc -3'
miRNA:   3'- aGAaGUUAGUagACGUGUA-GGAGUGG- -5'
22405 3' -47.2 NC_005056.1 + 4776 0.69 0.866077
Target:  5'- --cUCAAUCAggUUGUuggucGCAUCCaUCACCa -3'
miRNA:   3'- agaAGUUAGUa-GACG-----UGUAGG-AGUGG- -5'
22405 3' -47.2 NC_005056.1 + 3153 0.69 0.857046
Target:  5'- --aUCAGUUucccgacgaUGCGCAUCCUcCGCCa -3'
miRNA:   3'- agaAGUUAGuag------ACGUGUAGGA-GUGG- -5'
22405 3' -47.2 NC_005056.1 + 9364 1.15 0.001413
Target:  5'- cUCUUCAAUCAUCUGCACAUCCUCACCg -3'
miRNA:   3'- -AGAAGUUAGUAGACGUGUAGGAGUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.