miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22407 5' -61.5 NC_005056.1 + 20483 0.66 0.318364
Target:  5'- -uGCAUCaUGCUGGCaCGGGCGcGCGCa -3'
miRNA:   3'- ccCGUAG-GCGGCUGcGUCUGC-CGCGc -5'
22407 5' -61.5 NC_005056.1 + 9515 0.66 0.310723
Target:  5'- cGGUcgCUGCCGuguGCAGAcCGGCgGCa -3'
miRNA:   3'- cCCGuaGGCGGCug-CGUCU-GCCG-CGc -5'
22407 5' -61.5 NC_005056.1 + 1288 0.66 0.303223
Target:  5'- aGGGCGUgcauggUCGCCcaGGCGaGGuCGGCGUGg -3'
miRNA:   3'- -CCCGUA------GGCGG--CUGCgUCuGCCGCGC- -5'
22407 5' -61.5 NC_005056.1 + 2031 0.66 0.303223
Target:  5'- aGGGCGUUaugacugaCGUCGAuuuccaCGCGuucGGCGGCGCu -3'
miRNA:   3'- -CCCGUAG--------GCGGCU------GCGU---CUGCCGCGc -5'
22407 5' -61.5 NC_005056.1 + 6414 0.66 0.300261
Target:  5'- uGGCAUCCacgccgcgguaacGCucauaaagCGACGCGGucgccaucgcacacACGGCGCGc -3'
miRNA:   3'- cCCGUAGG-------------CG--------GCUGCGUC--------------UGCCGCGC- -5'
22407 5' -61.5 NC_005056.1 + 8092 0.66 0.292957
Target:  5'- aGGGCAgacaaaaacgaGCUGGCGCAGGUGGCacuGCGu -3'
miRNA:   3'- -CCCGUagg--------CGGCUGCGUCUGCCG---CGC- -5'
22407 5' -61.5 NC_005056.1 + 1764 0.67 0.261142
Target:  5'- cGGGCGggaGCCGAacggauugGCGGcaaACGGCGCa -3'
miRNA:   3'- -CCCGUaggCGGCUg-------CGUC---UGCCGCGc -5'
22407 5' -61.5 NC_005056.1 + 21127 0.67 0.253964
Target:  5'- cGGGCAggucgggCUGCCGguucgugGCGCuguccuGACGGUGUa -3'
miRNA:   3'- -CCCGUa------GGCGGC-------UGCGu-----CUGCCGCGc -5'
22407 5' -61.5 NC_005056.1 + 9584 0.67 0.235815
Target:  5'- cGGuGCAcaugCCGCCGGucUGCAcACGGCaGCGa -3'
miRNA:   3'- -CC-CGUa---GGCGGCU--GCGUcUGCCG-CGC- -5'
22407 5' -61.5 NC_005056.1 + 18584 0.68 0.223942
Target:  5'- uGGGCG-CUGCCGGuguggggauUGCGG-CGGCGgGa -3'
miRNA:   3'- -CCCGUaGGCGGCU---------GCGUCuGCCGCgC- -5'
22407 5' -61.5 NC_005056.1 + 7750 0.68 0.223942
Target:  5'- cGGUG-CCG-UGGCGCAGACGG-GCGg -3'
miRNA:   3'- cCCGUaGGCgGCUGCGUCUGCCgCGC- -5'
22407 5' -61.5 NC_005056.1 + 154 0.68 0.223362
Target:  5'- gGGGUGUaaaaaagCCGCC--CGCAGGCGGCGa- -3'
miRNA:   3'- -CCCGUA-------GGCGGcuGCGUCUGCCGCgc -5'
22407 5' -61.5 NC_005056.1 + 18698 0.68 0.212026
Target:  5'- uGGCAaaagacUCCGCCGAaauggccgcacucCGCAaGCaGGCGCGc -3'
miRNA:   3'- cCCGU------AGGCGGCU-------------GCGUcUG-CCGCGC- -5'
22407 5' -61.5 NC_005056.1 + 11433 0.68 0.201719
Target:  5'- cGGCAaaucugCUGCCGugGCuggcGugGGCGUu -3'
miRNA:   3'- cCCGUa-----GGCGGCugCGu---CugCCGCGc -5'
22407 5' -61.5 NC_005056.1 + 5624 0.69 0.181437
Target:  5'- cGGGUAUCCacagacucaCCGGCaGC-GugGGCGCGc -3'
miRNA:   3'- -CCCGUAGGc--------GGCUG-CGuCugCCGCGC- -5'
22407 5' -61.5 NC_005056.1 + 4034 0.69 0.171988
Target:  5'- aGGGCGUcaccgccaCCGCCgGugGCuuugcuGCGGCGCu -3'
miRNA:   3'- -CCCGUA--------GGCGG-CugCGuc----UGCCGCGc -5'
22407 5' -61.5 NC_005056.1 + 18818 0.7 0.16924
Target:  5'- cGGCugcaucAUCCGCCGAgGCGGcaguauugucaccgaGCuGGCGCGc -3'
miRNA:   3'- cCCG------UAGGCGGCUgCGUC---------------UG-CCGCGC- -5'
22407 5' -61.5 NC_005056.1 + 9600 0.7 0.162982
Target:  5'- uGGGCA-CCGuCCGugGgGGAacaGGUGCu -3'
miRNA:   3'- -CCCGUaGGC-GGCugCgUCUg--CCGCGc -5'
22407 5' -61.5 NC_005056.1 + 5962 0.71 0.13846
Target:  5'- cGGCGUgCCGCCcuGGCGCGG--GGCGCa -3'
miRNA:   3'- cCCGUA-GGCGG--CUGCGUCugCCGCGc -5'
22407 5' -61.5 NC_005056.1 + 5670 0.71 0.13846
Target:  5'- aGGCAugUCUGCCGugGCGGuCaGUGCa -3'
miRNA:   3'- cCCGU--AGGCGGCugCGUCuGcCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.