miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22408 3' -52.1 NC_005056.1 + 23182 0.68 0.615619
Target:  5'- gUCAUuUCAGGGUUGgccuccGCCaguGGCGGCAg -3'
miRNA:   3'- -AGUGuAGUUCCAGUaa----UGG---CCGCCGU- -5'
22408 3' -52.1 NC_005056.1 + 17225 0.66 0.709001
Target:  5'- gCGCAUCGucaucaaggccgAGGUC--UACCGGUGcGCu -3'
miRNA:   3'- aGUGUAGU------------UCCAGuaAUGGCCGC-CGu -5'
22408 3' -52.1 NC_005056.1 + 10715 1.09 0.000935
Target:  5'- aUCACAUCAAGGUCAUUACCGGCGGCAc -3'
miRNA:   3'- -AGUGUAGUUCCAGUAAUGGCCGCCGU- -5'
22408 3' -52.1 NC_005056.1 + 9446 0.78 0.152175
Target:  5'- -uGCcgCcGGGUCA-UACCGGCGGCAa -3'
miRNA:   3'- agUGuaGuUCCAGUaAUGGCCGCCGU- -5'
22408 3' -52.1 NC_005056.1 + 9384 0.66 0.709001
Target:  5'- gUCACAUUgccgccGGUaugacCCGGCGGCAu -3'
miRNA:   3'- -AGUGUAGuu----CCAguaauGGCCGCCGU- -5'
22408 3' -52.1 NC_005056.1 + 6768 0.66 0.720428
Target:  5'- gUCGg--CAAGGUgcUUGCCGGUGGUg -3'
miRNA:   3'- -AGUguaGUUCCAguAAUGGCCGCCGu -5'
22408 3' -52.1 NC_005056.1 + 5761 0.67 0.63911
Target:  5'- gCACGUUGcAGGUgAgccagcgcCCGGCGGCAu -3'
miRNA:   3'- aGUGUAGU-UCCAgUaau-----GGCCGCCGU- -5'
22408 3' -52.1 NC_005056.1 + 4880 0.7 0.500794
Target:  5'- aCGCAUC--GGUaaccUGCCGGCGGUAc -3'
miRNA:   3'- aGUGUAGuuCCAgua-AUGGCCGCCGU- -5'
22408 3' -52.1 NC_005056.1 + 4043 0.68 0.603893
Target:  5'- uUCGuCAUCAGGGcgUCAccgccaccGCCGGUGGCu -3'
miRNA:   3'- -AGU-GUAGUUCC--AGUaa------UGGCCGCCGu -5'
22408 3' -52.1 NC_005056.1 + 3652 0.67 0.674261
Target:  5'- gCGguUCAggGGGUUGUguuuUGCCGuGCGGCAg -3'
miRNA:   3'- aGUguAGU--UCCAGUA----AUGGC-CGCCGU- -5'
22408 3' -52.1 NC_005056.1 + 1738 0.68 0.627362
Target:  5'- gCACcgCc-GGUgGUgGCCGGUGGCAa -3'
miRNA:   3'- aGUGuaGuuCCAgUAaUGGCCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.