miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22408 5' -57 NC_005056.1 + 16439 0.7 0.237672
Target:  5'- -cCACCGCCCGUGC-GCUgggUCug-CGCg -3'
miRNA:   3'- uaGUGGCGGGCACGuCGG---AGuaaGUG- -5'
22408 5' -57 NC_005056.1 + 12706 0.66 0.407606
Target:  5'- gAUUGCCGCCCuUGUAGaCUCG-UCGCc -3'
miRNA:   3'- -UAGUGGCGGGcACGUCgGAGUaAGUG- -5'
22408 5' -57 NC_005056.1 + 12232 0.67 0.388486
Target:  5'- cAUCAUCGUCagcaGUGUGGCCUCAguggaGCu -3'
miRNA:   3'- -UAGUGGCGGg---CACGUCGGAGUaag--UG- -5'
22408 5' -57 NC_005056.1 + 166 0.67 0.388486
Target:  5'- --aGCCGCCCGcagGCGGCgaUGUUCAg -3'
miRNA:   3'- uagUGGCGGGCa--CGUCGgaGUAAGUg -5'
22408 5' -57 NC_005056.1 + 8855 0.67 0.360932
Target:  5'- gGUCAcCCGCCCgGUGgAGCUUUAUaUCAa -3'
miRNA:   3'- -UAGU-GGCGGG-CACgUCGGAGUA-AGUg -5'
22408 5' -57 NC_005056.1 + 3542 0.68 0.318113
Target:  5'- cGUCACCGaugaCCCG-GCaAGCCUCgg-CACg -3'
miRNA:   3'- -UAGUGGC----GGGCaCG-UCGGAGuaaGUG- -5'
22408 5' -57 NC_005056.1 + 9516 0.68 0.294311
Target:  5'- gGUCGCUGCCgUGUGCAGaCCggcggCAUgugCACc -3'
miRNA:   3'- -UAGUGGCGG-GCACGUC-GGa----GUAa--GUG- -5'
22408 5' -57 NC_005056.1 + 16778 0.7 0.250918
Target:  5'- -cCACCGCCCacauGUGC-GCCUCAgcCAUc -3'
miRNA:   3'- uaGUGGCGGG----CACGuCGGAGUaaGUG- -5'
22408 5' -57 NC_005056.1 + 27841 0.7 0.224399
Target:  5'- aAUCACCacugucugcggcgGCgCGUGCAGCCUCGa-CGCg -3'
miRNA:   3'- -UAGUGG-------------CGgGCACGUCGGAGUaaGUG- -5'
22408 5' -57 NC_005056.1 + 218 0.71 0.20711
Target:  5'- cAUCGCCGCCUGcggGCGGCUUU-UUUACa -3'
miRNA:   3'- -UAGUGGCGGGCa--CGUCGGAGuAAGUG- -5'
22408 5' -57 NC_005056.1 + 10680 1.08 0.000305
Target:  5'- cAUCACCGCCCGUGCAGCCUCAUUCACa -3'
miRNA:   3'- -UAGUGGCGGGCACGUCGGAGUAAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.