miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2241 5' -59.7 NC_001405.1 + 12190 0.66 0.369393
Target:  5'- -gGCGCGUCggcuugGGGcCCAGCGCagGUCAGc -3'
miRNA:   3'- agCGCGCAGag----UUC-GGUCGCG--CGGUC- -5'
2241 5' -59.7 NC_001405.1 + 12543 0.66 0.369393
Target:  5'- cUCGUGCGUg--GGGUUugcGCGCGCCGGg -3'
miRNA:   3'- -AGCGCGCAgagUUCGGu--CGCGCGGUC- -5'
2241 5' -59.7 NC_001405.1 + 16394 0.66 0.369393
Target:  5'- gUGCGCGaCUCGguuagcGGCCugcGCGUGCCc- -3'
miRNA:   3'- aGCGCGCaGAGU------UCGGu--CGCGCGGuc -5'
2241 5' -59.7 NC_001405.1 + 5550 0.67 0.327393
Target:  5'- cUCGUGCGgcgcCUCcuccaagggcAAGCU-GCGCGCCAa -3'
miRNA:   3'- -AGCGCGCa---GAG----------UUCGGuCGCGCGGUc -5'
2241 5' -59.7 NC_001405.1 + 26932 0.67 0.327393
Target:  5'- cUCGCGgGUCgauaCGGGUUcguuGgGCGCCAGa -3'
miRNA:   3'- -AGCGCgCAGa---GUUCGGu---CgCGCGGUC- -5'
2241 5' -59.7 NC_001405.1 + 34780 0.67 0.311612
Target:  5'- aUCGUGCagGUCUgCAcGGaCCAGCGCgGCCAc -3'
miRNA:   3'- -AGCGCG--CAGA-GU-UC-GGUCGCG-CGGUc -5'
2241 5' -59.7 NC_001405.1 + 16252 0.67 0.296415
Target:  5'- cCGCGCGUU---GGgCGGCaGUGCCGGg -3'
miRNA:   3'- aGCGCGCAGaguUCgGUCG-CGCGGUC- -5'
2241 5' -59.7 NC_001405.1 + 1359 0.67 0.294186
Target:  5'- gUCGgGCGUCUCAGGaUAGCaggcaccaauuuagGaCGCCGGg -3'
miRNA:   3'- -AGCgCGCAGAGUUCgGUCG--------------C-GCGGUC- -5'
2241 5' -59.7 NC_001405.1 + 24370 0.68 0.274711
Target:  5'- aCGUGCuGUUgaagcaucugCAGcGCCAGUGCGCCAu -3'
miRNA:   3'- aGCGCG-CAGa---------GUU-CGGUCGCGCGGUc -5'
2241 5' -59.7 NC_001405.1 + 18603 0.69 0.241392
Target:  5'- cCGCGCGUCcCugcGCCGuGC-CGCCAGc -3'
miRNA:   3'- aGCGCGCAGaGuu-CGGU-CGcGCGGUC- -5'
2241 5' -59.7 NC_001405.1 + 10707 0.71 0.165729
Target:  5'- cCGCGUGUCgaaccCAGGUguGCGaCGUCAGa -3'
miRNA:   3'- aGCGCGCAGa----GUUCGguCGC-GCGGUC- -5'
2241 5' -59.7 NC_001405.1 + 12623 0.71 0.152562
Target:  5'- -aGCGCGUCguagacCAGGCCGGCcucaucGgGCCGGa -3'
miRNA:   3'- agCGCGCAGa-----GUUCGGUCG------CgCGGUC- -5'
2241 5' -59.7 NC_001405.1 + 25083 1.08 0.000247
Target:  5'- cUCGCGCGUCUCAAGCCAGCGCGCCAGc -3'
miRNA:   3'- -AGCGCGCAGAGUUCGGUCGCGCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.