Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2241 | 5' | -59.7 | NC_001405.1 | + | 12190 | 0.66 | 0.369393 |
Target: 5'- -gGCGCGUCggcuugGGGcCCAGCGCagGUCAGc -3' miRNA: 3'- agCGCGCAGag----UUC-GGUCGCG--CGGUC- -5' |
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2241 | 5' | -59.7 | NC_001405.1 | + | 12543 | 0.66 | 0.369393 |
Target: 5'- cUCGUGCGUg--GGGUUugcGCGCGCCGGg -3' miRNA: 3'- -AGCGCGCAgagUUCGGu--CGCGCGGUC- -5' |
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2241 | 5' | -59.7 | NC_001405.1 | + | 16394 | 0.66 | 0.369393 |
Target: 5'- gUGCGCGaCUCGguuagcGGCCugcGCGUGCCc- -3' miRNA: 3'- aGCGCGCaGAGU------UCGGu--CGCGCGGuc -5' |
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2241 | 5' | -59.7 | NC_001405.1 | + | 5550 | 0.67 | 0.327393 |
Target: 5'- cUCGUGCGgcgcCUCcuccaagggcAAGCU-GCGCGCCAa -3' miRNA: 3'- -AGCGCGCa---GAG----------UUCGGuCGCGCGGUc -5' |
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2241 | 5' | -59.7 | NC_001405.1 | + | 26932 | 0.67 | 0.327393 |
Target: 5'- cUCGCGgGUCgauaCGGGUUcguuGgGCGCCAGa -3' miRNA: 3'- -AGCGCgCAGa---GUUCGGu---CgCGCGGUC- -5' |
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2241 | 5' | -59.7 | NC_001405.1 | + | 34780 | 0.67 | 0.311612 |
Target: 5'- aUCGUGCagGUCUgCAcGGaCCAGCGCgGCCAc -3' miRNA: 3'- -AGCGCG--CAGA-GU-UC-GGUCGCG-CGGUc -5' |
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2241 | 5' | -59.7 | NC_001405.1 | + | 16252 | 0.67 | 0.296415 |
Target: 5'- cCGCGCGUU---GGgCGGCaGUGCCGGg -3' miRNA: 3'- aGCGCGCAGaguUCgGUCG-CGCGGUC- -5' |
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2241 | 5' | -59.7 | NC_001405.1 | + | 1359 | 0.67 | 0.294186 |
Target: 5'- gUCGgGCGUCUCAGGaUAGCaggcaccaauuuagGaCGCCGGg -3' miRNA: 3'- -AGCgCGCAGAGUUCgGUCG--------------C-GCGGUC- -5' |
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2241 | 5' | -59.7 | NC_001405.1 | + | 24370 | 0.68 | 0.274711 |
Target: 5'- aCGUGCuGUUgaagcaucugCAGcGCCAGUGCGCCAu -3' miRNA: 3'- aGCGCG-CAGa---------GUU-CGGUCGCGCGGUc -5' |
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2241 | 5' | -59.7 | NC_001405.1 | + | 18603 | 0.69 | 0.241392 |
Target: 5'- cCGCGCGUCcCugcGCCGuGC-CGCCAGc -3' miRNA: 3'- aGCGCGCAGaGuu-CGGU-CGcGCGGUC- -5' |
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2241 | 5' | -59.7 | NC_001405.1 | + | 10707 | 0.71 | 0.165729 |
Target: 5'- cCGCGUGUCgaaccCAGGUguGCGaCGUCAGa -3' miRNA: 3'- aGCGCGCAGa----GUUCGguCGC-GCGGUC- -5' |
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2241 | 5' | -59.7 | NC_001405.1 | + | 12623 | 0.71 | 0.152562 |
Target: 5'- -aGCGCGUCguagacCAGGCCGGCcucaucGgGCCGGa -3' miRNA: 3'- agCGCGCAGa-----GUUCGGUCG------CgCGGUC- -5' |
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2241 | 5' | -59.7 | NC_001405.1 | + | 25083 | 1.08 | 0.000247 |
Target: 5'- cUCGCGCGUCUCAAGCCAGCGCGCCAGc -3' miRNA: 3'- -AGCGCGCAGAGUUCGGUCGCGCGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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