miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22413 5' -57.3 NC_005056.1 + 9595 0.66 0.440044
Target:  5'- -cUGAaGCCAGUCGGUgcacaugccGCCGGUcUGCa -3'
miRNA:   3'- cuACUgCGGUCAGUCG---------CGGUCAcGCG- -5'
22413 5' -57.3 NC_005056.1 + 8317 0.66 0.430077
Target:  5'- -cUGGCGUCuGUgCAG-GCCGG-GCGCu -3'
miRNA:   3'- cuACUGCGGuCA-GUCgCGGUCaCGCG- -5'
22413 5' -57.3 NC_005056.1 + 19601 0.66 0.430077
Target:  5'- -uUGugGCC-GUCuGUGUgagcuuacgCAGUGCGCc -3'
miRNA:   3'- cuACugCGGuCAGuCGCG---------GUCACGCG- -5'
22413 5' -57.3 NC_005056.1 + 1608 0.67 0.373194
Target:  5'- -uUGAUGCCAccggccucgguGUCGGCGuguuCCAgcucGUGCGCu -3'
miRNA:   3'- cuACUGCGGU-----------CAGUCGC----GGU----CACGCG- -5'
22413 5' -57.3 NC_005056.1 + 11376 0.67 0.373194
Target:  5'- uGAUGA-GCCGGUCGGCaG-CAGU-CGCg -3'
miRNA:   3'- -CUACUgCGGUCAGUCG-CgGUCAcGCG- -5'
22413 5' -57.3 NC_005056.1 + 16640 0.68 0.319208
Target:  5'- uGUGACGCCugacucguuaagcaGGUCAGCaUCGGUGC-Cg -3'
miRNA:   3'- cUACUGCGG--------------UCAGUCGcGGUCACGcG- -5'
22413 5' -57.3 NC_005056.1 + 9510 0.68 0.305681
Target:  5'- ---aACGCCGGUCGcUGCC-GUGUGCa -3'
miRNA:   3'- cuacUGCGGUCAGUcGCGGuCACGCG- -5'
22413 5' -57.3 NC_005056.1 + 5418 0.69 0.282893
Target:  5'- uGUGGCGUCuGgauacCGGCgauauuGCCGGUGCGCu -3'
miRNA:   3'- cUACUGCGGuCa----GUCG------CGGUCACGCG- -5'
22413 5' -57.3 NC_005056.1 + 12797 0.69 0.275601
Target:  5'- --cGcCGCCAGcucguUCAGCGUauuCAGUGCGUc -3'
miRNA:   3'- cuaCuGCGGUC-----AGUCGCG---GUCACGCG- -5'
22413 5' -57.3 NC_005056.1 + 18484 0.71 0.222606
Target:  5'- cGUGACGCgCuGgCGcGUGUCAGUGCGCa -3'
miRNA:   3'- cUACUGCG-GuCaGU-CGCGGUCACGCG- -5'
22413 5' -57.3 NC_005056.1 + 4060 0.71 0.210211
Target:  5'- -cUGACGCCGGUCAGCaGUucgucauCAGgGCGUc -3'
miRNA:   3'- cuACUGCGGUCAGUCG-CG-------GUCaCGCG- -5'
22413 5' -57.3 NC_005056.1 + 6001 0.74 0.130643
Target:  5'- --gGACGCCGGUaCAGCGUCAG-GUGa -3'
miRNA:   3'- cuaCUGCGGUCA-GUCGCGGUCaCGCg -5'
22413 5' -57.3 NC_005056.1 + 8527 0.78 0.064521
Target:  5'- cGUGACGgcaUCAGUCAGCGCCc-UGCGCa -3'
miRNA:   3'- cUACUGC---GGUCAGUCGCGGucACGCG- -5'
22413 5' -57.3 NC_005056.1 + 5684 0.8 0.04779
Target:  5'- cGUGACGCUGGUgAuGcCGCCGGUGCGCu -3'
miRNA:   3'- cUACUGCGGUCAgU-C-GCGGUCACGCG- -5'
22413 5' -57.3 NC_005056.1 + 19703 1.1 0.000213
Target:  5'- cGAUGACGCCAGUCAGCGCCAGUGCGCc -3'
miRNA:   3'- -CUACUGCGGUCAGUCGCGGUCACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.