miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22416 5' -45.2 NC_005056.1 + 6638 0.66 0.987769
Target:  5'- cGGCAccgccgucGAAcugcCCGACGu--UCAGACCGCg -3'
miRNA:   3'- -CCGU--------UUUu---GGUUGUcuuAGUCUGGUG- -5'
22416 5' -45.2 NC_005056.1 + 10516 0.66 0.983716
Target:  5'- --gGAAGACCAGCAGGAggCGG-UCGCc -3'
miRNA:   3'- ccgUUUUUGGUUGUCUUa-GUCuGGUG- -5'
22416 5' -45.2 NC_005056.1 + 2744 0.66 0.983716
Target:  5'- uGGCAcGggUCAACcGuuacAGUCAGACCGg -3'
miRNA:   3'- -CCGUuUuuGGUUGuC----UUAGUCUGGUg -5'
22416 5' -45.2 NC_005056.1 + 18515 0.66 0.983716
Target:  5'- aGGCAAAAcuuaacGCaguaaAACAGcguuAUCAGGCCGg -3'
miRNA:   3'- -CCGUUUU------UGg----UUGUCu---UAGUCUGGUg -5'
22416 5' -45.2 NC_005056.1 + 18764 0.67 0.978718
Target:  5'- uGCGGAGugcgGCCAuuucgGCGGAGUCuuuuGCCACg -3'
miRNA:   3'- cCGUUUU----UGGU-----UGUCUUAGuc--UGGUG- -5'
22416 5' -45.2 NC_005056.1 + 1688 0.67 0.97583
Target:  5'- cGGCcaccACCGGCGGugcCAGuACCACg -3'
miRNA:   3'- -CCGuuuuUGGUUGUCuuaGUC-UGGUG- -5'
22416 5' -45.2 NC_005056.1 + 26280 0.67 0.972666
Target:  5'- cGGCAAAuGCUGACGGAG--GGACaaaACg -3'
miRNA:   3'- -CCGUUUuUGGUUGUCUUagUCUGg--UG- -5'
22416 5' -45.2 NC_005056.1 + 7852 0.67 0.96546
Target:  5'- cGGCAGcGACCAGCgAGAuaaacGUC--GCCACc -3'
miRNA:   3'- -CCGUUuUUGGUUG-UCU-----UAGucUGGUG- -5'
22416 5' -45.2 NC_005056.1 + 16089 0.68 0.961816
Target:  5'- cGGCGAAGACgAagaaacgaaacucgcGCAGAccguuuccaauaucAUCGGcACCACu -3'
miRNA:   3'- -CCGUUUUUGgU---------------UGUCU--------------UAGUC-UGGUG- -5'
22416 5' -45.2 NC_005056.1 + 12386 0.68 0.961396
Target:  5'- aGCAAugcGACCAACAGcacGUCugaaacacuGGCCGCa -3'
miRNA:   3'- cCGUUu--UUGGUUGUCu--UAGu--------CUGGUG- -5'
22416 5' -45.2 NC_005056.1 + 20158 0.68 0.952301
Target:  5'- cGGUGuc-AUCAACaaAGAGUCAGACaCACu -3'
miRNA:   3'- -CCGUuuuUGGUUG--UCUUAGUCUG-GUG- -5'
22416 5' -45.2 NC_005056.1 + 14978 0.68 0.952301
Target:  5'- aGGCAAAuccACCuuCuGAuacuaCAGACCGCg -3'
miRNA:   3'- -CCGUUUu--UGGuuGuCUua---GUCUGGUG- -5'
22416 5' -45.2 NC_005056.1 + 1765 0.69 0.930059
Target:  5'- gGGCGGGAGCCgAACGGAuu--GGCgGCa -3'
miRNA:   3'- -CCGUUUUUGG-UUGUCUuaguCUGgUG- -5'
22416 5' -45.2 NC_005056.1 + 17331 0.7 0.909732
Target:  5'- uGGUAAGAGCCuGCAaaacGAAUCGGcacagcauCCACa -3'
miRNA:   3'- -CCGUUUUUGGuUGU----CUUAGUCu-------GGUG- -5'
22416 5' -45.2 NC_005056.1 + 1420 0.7 0.894458
Target:  5'- cGCAAGaccauGACCAgcaGCGGAcgCAGcGCCACc -3'
miRNA:   3'- cCGUUU-----UUGGU---UGUCUuaGUC-UGGUG- -5'
22416 5' -45.2 NC_005056.1 + 980 0.7 0.886315
Target:  5'- uGGCuguc-CCAGCAGGAuuUCAG-CCGCu -3'
miRNA:   3'- -CCGuuuuuGGUUGUCUU--AGUCuGGUG- -5'
22416 5' -45.2 NC_005056.1 + 18804 0.71 0.839882
Target:  5'- uGCGAAAGCCggUGGAGaugcugcggcuauUCAGGCgGCa -3'
miRNA:   3'- cCGUUUUUGGuuGUCUU-------------AGUCUGgUG- -5'
22416 5' -45.2 NC_005056.1 + 5734 0.72 0.819633
Target:  5'- cGGCAuc-ACCAgcgucacGCAGAAaCAGACCGg -3'
miRNA:   3'- -CCGUuuuUGGU-------UGUCUUaGUCUGGUg -5'
22416 5' -45.2 NC_005056.1 + 14179 0.73 0.766065
Target:  5'- cGGCAGAugaacagcAACaacaGGCAGAAUCacaaaAGGCCGCg -3'
miRNA:   3'- -CCGUUU--------UUGg---UUGUCUUAG-----UCUGGUG- -5'
22416 5' -45.2 NC_005056.1 + 28331 0.74 0.719164
Target:  5'- cGCGuuGACCucgcuCAGAacgguAUCAGGCCGCa -3'
miRNA:   3'- cCGUuuUUGGuu---GUCU-----UAGUCUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.