Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2242 | 3' | -58.5 | NC_001405.1 | + | 18866 | 0.66 | 0.426999 |
Target: 5'- -cGGGCCagGACGccucggaguaCCugAGCCCCGGGc -3' miRNA: 3'- caUUCGG--CUGCa---------GGugUCGGGGCCUc -5' |
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2242 | 3' | -58.5 | NC_001405.1 | + | 12142 | 0.66 | 0.407981 |
Target: 5'- -cAAGCCGACGc-----GCCCUGGAGg -3' miRNA: 3'- caUUCGGCUGCagguguCGGGGCCUC- -5' |
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2242 | 3' | -58.5 | NC_001405.1 | + | 10356 | 0.68 | 0.328478 |
Target: 5'- -gGGGCCaGCGUaggguggCCGgGGCUCCGGGGg -3' miRNA: 3'- caUUCGGcUGCA-------GGUgUCGGGGCCUC- -5' |
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2242 | 3' | -58.5 | NC_001405.1 | + | 9048 | 0.68 | 0.321266 |
Target: 5'- -gGGGgCGugGUCUACAGCCgcguCUGGAa -3' miRNA: 3'- caUUCgGCugCAGGUGUCGG----GGCCUc -5' |
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2242 | 3' | -58.5 | NC_001405.1 | + | 6543 | 0.69 | 0.283369 |
Target: 5'- -gGGGUCuGCGUCCACGGuaaagaCCCCGGGc -3' miRNA: 3'- caUUCGGcUGCAGGUGUC------GGGGCCUc -5' |
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2242 | 3' | -58.5 | NC_001405.1 | + | 25881 | 0.73 | 0.140925 |
Target: 5'- ---cGCCuGACGaaaagUCCGCGGCUCCGGGGu -3' miRNA: 3'- cauuCGG-CUGC-----AGGUGUCGGGGCCUC- -5' |
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2242 | 3' | -58.5 | NC_001405.1 | + | 25980 | 0.96 | 0.002568 |
Target: 5'- gGUAAGCCGACGUCCACAGCCCCGaguGAGu -3' miRNA: 3'- -CAUUCGGCUGCAGGUGUCGGGGC---CUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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